Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1768 CTAATCCTTCTCTTCTCTTCAATCTTCTTCTTCTTCGATGATCTTATTCTTGTAGTTCAGATTTTTCATCTCTGTTTCTATTTGCTTTGCTTTAAGCTCTTAACTATGGCGGTCGATCTGATGAGTTTTCCTAAGATGGATGATCAGATGGCTATACAGGAGGCTGCCTCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCTCACAAACAACCTTCAAGCCATGTCGATTGCTCTGACCTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCTCTTCTCAATCGGACCGGTCATGCGCGCTTCCGCCGAGGTCCGGTTTCCAATTCGACCTCCTCGTCGTCGTCCGGTTCAGTTCCGCAAAATCAGGCGACGAATCTCACTCCTACGCCGTTTACTTCACCGGCCACGGTTTCTGCTCCGCCGTTCACCGCTCCGGCTACGGTCGCGCAGCCGCAGGCGAAGGTTGCTGCGGCGGCGAACTTTCTCCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACCAGGCCGAATATTTTGAACTCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTTAGCGTCTCTTCGAGTTCCTCGTTTATGTCCTCTGCGATCACTGGCGACGGCAGCGTATCCAACGGAAAATTAGGAACGTCGATCTTTTTGGCACCGGCGCCGACTGCTTCCGGCGGAAAGCCGCCGCTCTCCGCGGCGCCGTACAAGAAGAGGTGCCACGAACACGATCACTCCGAAGATTTGTCCGGAAAATTCTCCGGCTCTACCTCGGCCTCCGTCAAGTGCCATTGCTCAAAAAGAAGGAAAAATCGCATGAAGAAGACGATCCGAGTCCCGGCGATCAGTTCAAAAATCGCCGATATTCCACCGGACGAGTACTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCTCCCTACCCACGGGGATATTACAAGTGTAGTACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGAGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAGTATGGCCGCCGGAGTATCTTTAGTTTTTGAGTCAACTTGA 1146 51.4 LILLFSSIFFFFDDLILVVQIFHLCFYLLCFKLLTMAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSNSTSSSSSGSVPQNQATNLTPTPFTSPATVSAPPFTAPATVAQPQAKVAAAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASVKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPESMAAGVSLVFEST 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42891173 42893001 + Maker00016427 Lcy9g1768 642884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1768 381 FunFam WRKY transcription factor 65 287 364 - -
Lcy9g1768 381 Pfam Plant zinc cluster domain 250 301 IPR018872 -
Lcy9g1768 381 SUPERFAMILY WRKY DNA-binding domain 301 363 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g1768 381 SMART WRKY_cls 303 363 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g1768 381 Gene3D WRKY domain 282 356 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g1768 381 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 51 364 IPR044810 GO:0003700(InterPro)
Lcy9g1768 381 MobiDBLite consensus disorder prediction 109 144 - -
Lcy9g1768 381 ProSiteProfiles WRKY domain profile. 298 364 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g1768 381 Pfam WRKY DNA -binding domain 305 361 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g1768 381 MobiDBLite consensus disorder prediction 107 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0329 Lcy-Chr2:2712649 Lcy9g1768 Lcy-Chr9:42891173 5.50E-93 dispersed
Lcy3g1721 Lcy-Chr3:44499172 Lcy9g1768 Lcy-Chr9:42891173 2.74E-06 dispersed
Lcy9g1768 Lcy-Chr9:42891173 Lcy12g0360 Lcy-Chr12:4389219 3.68E-07 dispersed
Lcy9g1768 Lcy-Chr9:42891173 Lcy9g2076 Lcy-Chr9:45518531 3.59E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20684 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1768 - - - 0.0