Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1774 ATGGGGACCTCTTTTGCCTCATCCCTCAAATTATATAACCACCAACAATCATTACAACTTGAAAGAGCAATTTCACCATTTTCAGGCCCCAAAATGCAAATCCAAACTTTTCTTTTTCTCCCCTTCTTTGTTCTTCTTCTTCACTCAACTTGCTGCTTTGCTCAGCTTCATCTCAACTATTACCATAATTCATGTCCCAATGTTGAATCCATTGTAAGAGCTGCAGTGAAACAGAAATTTGATCAAACTTTTGTCACTGCCCCTGCCACTCTCAGGCTCTTTTTTCATGATTGTTTTGTGAGGGGTTGTGATGCTTCTGTGTTGCTTCATTCAAATAACCACACTTCTGAGAAGGACAATGCTGAGAATCTTTCGCTCGCCGGAGACGGGTTCGACACCGTGATCAAAGCTAAGGCCGCCGTCGATAGCGTGCCGGGATGTAAGAACAAGGTGTCTTGTGCTGACATATTGGCTTTGGCTACTAGAGATGTTGTTGTTTTGGTAAGTGCAAAGAGGCAAAGCTTCTACTCTTCTGTCTGGTGCTTGTCGATGCGAGACGGGCGGATCTCGACACGAAAGAGCGTTCGACACCATCTTCCTTTGCCTGATTTTGGATTGGATCAGCTCAATGCCATGTTTGCAAGACATGGTCTAACCCAAACAGACATGATTGCTCTCTCAGGTGCACATACAATTGGATTCTCACACTGCAAGCACTTCTCCAAAAGGCTATATAGCTTCCACAGCAAAAACCGAGTCGACCCGACGTTCAATCCGACGTATGTCAACGAGCTCAAGAGGGAGTGCCCGAGAAACGTCGACCAGAGAATCGCTGTCGATATGGACTCGACGTCGTCGTTCACATTCGACAACGTGTACTTCAAGAATCTGCAGATGGGAAAAGGGCTGTTCACCTCAGACCAAGTGTTGTTCACTGATCCAAGATCAAGAAAAACAGTGAACTTATTTGCTTCCAACAGCTCAGCTTTTGAGCAGGCTTTTGTGGTTGCAATGACAAAGCTTGGGAGAGTGGGAGTCAAAACAAGAAACCAAGGGGAGATCAGAATTGACTGTTCTTCAGTGAACTAA 1089 45.18 MGTSFASSLKLYNHQQSLQLERAISPFSGPKMQIQTFLFLPFFVLLLHSTCCFAQLHLNYYHNSCPNVESIVRAAVKQKFDQTFVTAPATLRLFFHDCFVRGCDASVLLHSNNHTSEKDNAENLSLAGDGFDTVIKAKAAVDSVPGCKNKVSCADILALATRDVVVLVSAKRQSFYSSVWCLSMRDGRISTRKSVRHHLPLPDFGLDQLNAMFARHGLTQTDMIALSGAHTIGFSHCKHFSKRLYSFHSKNRVDPTFNPTYVNELKRECPRNVDQRIAVDMDSTSSFTFDNVYFKNLQMGKGLFTSDQVLFTDPRSRKTVNLFASNSSAFEQAFVVAMTKLGRVGVKTRNQGEIRIDCSSVN 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42933856 42935473 + Maker00016653 Lcy9g1774 642890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1774 362 CDD secretory_peroxidase 55 361 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy9g1774 362 ProSiteProfiles Plant heme peroxidase family profile. 55 362 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 Gene3D - 59 362 - -
Lcy9g1774 362 ProSitePatterns Peroxidases active site signature. 87 98 IPR019794 GO:0004601(InterPro)
Lcy9g1774 362 SUPERFAMILY Heme-dependent peroxidases 55 362 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Haem peroxidase superfamily signature 87 101 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Haem peroxidase superfamily signature 222 237 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Haem peroxidase superfamily signature 282 297 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Haem peroxidase superfamily signature 151 168 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PANTHER - 42 362 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 Pfam Peroxidase 72 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Plant peroxidase signature 296 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Plant peroxidase signature 150 160 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Plant peroxidase signature 65 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Plant peroxidase signature 280 295 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Plant peroxidase signature 221 233 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Plant peroxidase signature 336 349 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Plant peroxidase signature 89 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 PRINTS Plant peroxidase signature 129 142 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1774 362 ProSitePatterns Peroxidases proximal heme-ligand signature. 222 232 IPR019793 -
Lcy9g1774 362 Gene3D Peroxidase, domain 2 200 341 - -
Lcy9g1774 362 FunFam Peroxidase 200 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0927 Lcy-Chr1:8088146 Lcy9g1774 Lcy-Chr9:42933856 7.00E-134 dispersed
Lcy9g1774 Lcy-Chr9:42933856 Lcy6g0931 Lcy-Chr6:9470773 2.56E-63 dispersed
Lcy9g1774 Lcy-Chr9:42933856 Lcy8g0730 Lcy-Chr8:26949638 1.92E-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1774 K00430 - csv:101218982 579.326