Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1775 ATGGCGAACGCTATCACTCTCCAAGAGATTCGAAACGAGTCCGTCGACCTGGAACGTATTCCAATCGGCGAAGTGTTCGAGAAGTTAAAATGCTCAAAACAAGGTCTCAGTTCAGAGGAAGGAGCCAATCGGCTTCAAGTTTTCGGACCGAACAAACTCGAAGAGAAAAAGGAAAGCAAAATTCTGAAATTTCTGGGGTTTATGTGGAATCCCCTCTCTTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTGGCGAACGGCGGTGGAAGGTCTCCGGACTGGCAGGATTTTGTGGGAGTCATTGCCCTGCTTTTGATCAACTCAACCATCAGTTTTTTTGAAGAAAACAACGCAGGAAATGCAGCTGCAGCCCTTATGGCCGGCCTTGCTCCCAAAACTAAGATCTTAAATCTTTGCAATTCCAGCGAAGTCGTCAGGAGACAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGCGGACTGCGATCCCTGGGTGTTGCTAGACAGGAAGTACCTGAGAAAACCAAAGAAAGTCCAGGAGAACCATGGCAACTTGTTGGATTGTTAGCTCTGTTTGATCCTCCCAGGCATGATAGTGCAGAAACCATCAGAAGGGCTCTGAACCTTGGAGTAAATGTCAAGATGATCACTGGTGACCAACTGGCCATTGCCAAGGAAACCGGTCGGAGACTTGGTATGGGATCAAATATGTACCCTTCTTCTGCATTACTTGGTCAAGACAGGAGTACATCAACAGATTCCGTTCCTGTAGACGAGTTGATTGAAACGGCTGATGGATTTGCTGGTGTATTTCCAGAACATAAATATGAAATTGTGAGAAAGTTACAAGAGAAGAAACACATTTGTGGAATGACTGGTGATGGTGTAAATGACGCCCCTGCACTAAAGAGGGCGGATATTGGAATAGCTGTTGCTGATGCAACCGATGCAGCTAGAGGCGCTTCTGACATTGTCCTCACTGAACCGGGATTGAGCGTCATTATCAGTGCAGTATTGACCAGCAGGGCTATCTTCCAGAGGATGAAGAACTATACGATTTATGCAGTTTCCATCACCATTCGTATAGTGTTCGGTTTTATGTTGATTGCTTTGATTTGGAAGTTTGATTTCGCTCCATTCATGGTTTTAATCATAGCTATTCTAAACGATGGAACAATCATGACCATTTCAAAGGACCGAGTTAAGCCTTCTCCACAGCCCGACAGCTGGAAGTTGAAGGAAATTTTCGCCACTGGCATTGTGTTAGGAGGTTACTTGGCACTGATGACAGTCTTATTCTTCTGGCTCGCGAGAGACACTGACTTTTTCTCGAACAAGTTTCATGTAGAATCCCTGAGGACCAACGACCCGAAAATGACGTCAGCGTTGTATCTACAAGTTAGTATCGTGAGTCAGGCCCTTATTTTTGTCACGAGGTCTCGAAGTTGGTCCTTTGTCGAACGTCCCGGACTTCTCTTAGTGGGCGCCTTCATAATCGCCCAGCTGGTTGCAACTGTAATAGCAGTGTATCCAGAATGGGATTTTGCAAGGATAAATGGCATTGGCTGGGGGTGGGCTGGAGTGATCTGGCTATATAGTTTGATAACTTACATCCCTCTTGATATTCTCAAATTTACCATCCGCTACGCTCTCAGTGGAAGGGCTTGGAACAATCTTCTCCAGAACAAGACTGCTTTCACAACAAAGAAAGATTATGGCAAAGAAGAGAGGGAAGCACAATGGGCTACCACACAAAGGACCATTCATGGTCTTCAACCACCTCAATCCAGCAACGCTCTTTCTGATAGGAACAGTTGCGGGGAGCTTTCCGAAATCGCCGAGCAAGCCAGGCGACGAGCTGAAATTGCAAGGCTTCGTGAGTTGCACACCCTGAAAGGTCGGGTCGAGTCGGTGGTGAAGTTGAAAGGACTAGACATCGACACAATCAATCAACATTATACAGTCTAA 1974 45.95 MANAITLQEIRNESVDLERIPIGEVFEKLKCSKQGLSSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGRSPDWQDFVGVIALLLINSTISFFEENNAGNAAAALMAGLAPKTKILNLCNSSEVVRRQVHGVIDKFAECGLRSLGVARQEVPEKTKESPGEPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLGQDRSTSTDSVPVDELIETADGFAGVFPEHKYEIVRKLQEKKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWLARDTDFFSNKFHVESLRTNDPKMTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVGAFIIAQLVATVIAVYPEWDFARINGIGWGWAGVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQPPQSSNALSDRNSCGELSEIAEQARRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42936955 42942121 - Maker00016686 Lcy9g1775 642891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1775 657 PRINTS P-type cation-transporting ATPase superfamily signature 317 329 - -
Lcy9g1775 657 PRINTS P-type cation-transporting ATPase superfamily signature 189 200 - -
Lcy9g1775 657 PRINTS P-type cation-transporting ATPase superfamily signature 294 313 - -
Lcy9g1775 657 PRINTS P-type cation-transporting ATPase superfamily signature 211 221 - -
Lcy9g1775 657 Gene3D - 138 194 IPR023299 GO:0000166(InterPro)
Lcy9g1775 657 NCBIfam HAD-IC family P-type ATPase 269 384 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1775 657 FunFam ATPase 4 plasma membrane-type 284 521 - -
Lcy9g1775 657 Pfam Cation transporter/ATPase, N-terminus 20 82 IPR004014 -
Lcy9g1775 657 Gene3D - 195 331 IPR023214 -
Lcy9g1775 657 PRINTS H+-transporting ATPase (proton pump) signature 266 282 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1775 657 PRINTS H+-transporting ATPase (proton pump) signature 325 350 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1775 657 PRINTS H+-transporting ATPase (proton pump) signature 294 310 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1775 657 PRINTS H+-transporting ATPase (proton pump) signature 151 169 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1775 657 PRINTS H+-transporting ATPase (proton pump) signature 466 487 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1775 657 SUPERFAMILY HAD-like 186 340 IPR036412 -
Lcy9g1775 657 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 553 IPR023298 -
Lcy9g1775 657 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Lcy9g1775 657 Gene3D - 607 657 - -
Lcy9g1775 657 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 137 200 IPR023299 GO:0000166(InterPro)
Lcy9g1775 657 FunFam Plasma membrane ATPase 186 342 - -
Lcy9g1775 657 Pfam haloacid dehalogenase-like hydrolase 146 308 - -
Lcy9g1775 657 Gene3D - 95 132 - -
Lcy9g1775 657 Gene3D - 332 521 - -
Lcy9g1775 657 PANTHER CALCIUM-TRANSPORTING ATPASE 136 581 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0298 Lcy-Chr2:2384611 Lcy9g1775 Lcy-Chr9:42936955 0 dispersed
Lcy4g1636 Lcy-Chr4:41309480 Lcy9g1775 Lcy-Chr9:42936955 2.08E-123 dispersed
Lcy5g2280 Lcy-Chr5:45789954 Lcy9g1775 Lcy-Chr9:42936955 0 dispersed
Lcy9g1775 Lcy-Chr9:42936955 Lcy9g1776 Lcy-Chr9:42947610 0 tandem
Lcy5g1438 Lcy-Chr5:34440815 Lcy9g1775 Lcy-Chr9:42936955 0 transposed
Lcy9g0731 Lcy-Chr9:24866584 Lcy9g1775 Lcy-Chr9:42936955 0 transposed
Lcy13g1342 Lcy-Chr13:31378114 Lcy9g1775 Lcy-Chr9:42936955 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1775 K01535 - csv:101219224 899.427