Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1775 | ATGGCGAACGCTATCACTCTCCAAGAGATTCGAAACGAGTCCGTCGACCTGGAACGTATTCCAATCGGCGAAGTGTTCGAGAAGTTAAAATGCTCAAAACAAGGTCTCAGTTCAGAGGAAGGAGCCAATCGGCTTCAAGTTTTCGGACCGAACAAACTCGAAGAGAAAAAGGAAAGCAAAATTCTGAAATTTCTGGGGTTTATGTGGAATCCCCTCTCTTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTGGCGAACGGCGGTGGAAGGTCTCCGGACTGGCAGGATTTTGTGGGAGTCATTGCCCTGCTTTTGATCAACTCAACCATCAGTTTTTTTGAAGAAAACAACGCAGGAAATGCAGCTGCAGCCCTTATGGCCGGCCTTGCTCCCAAAACTAAGATCTTAAATCTTTGCAATTCCAGCGAAGTCGTCAGGAGACAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGCGGACTGCGATCCCTGGGTGTTGCTAGACAGGAAGTACCTGAGAAAACCAAAGAAAGTCCAGGAGAACCATGGCAACTTGTTGGATTGTTAGCTCTGTTTGATCCTCCCAGGCATGATAGTGCAGAAACCATCAGAAGGGCTCTGAACCTTGGAGTAAATGTCAAGATGATCACTGGTGACCAACTGGCCATTGCCAAGGAAACCGGTCGGAGACTTGGTATGGGATCAAATATGTACCCTTCTTCTGCATTACTTGGTCAAGACAGGAGTACATCAACAGATTCCGTTCCTGTAGACGAGTTGATTGAAACGGCTGATGGATTTGCTGGTGTATTTCCAGAACATAAATATGAAATTGTGAGAAAGTTACAAGAGAAGAAACACATTTGTGGAATGACTGGTGATGGTGTAAATGACGCCCCTGCACTAAAGAGGGCGGATATTGGAATAGCTGTTGCTGATGCAACCGATGCAGCTAGAGGCGCTTCTGACATTGTCCTCACTGAACCGGGATTGAGCGTCATTATCAGTGCAGTATTGACCAGCAGGGCTATCTTCCAGAGGATGAAGAACTATACGATTTATGCAGTTTCCATCACCATTCGTATAGTGTTCGGTTTTATGTTGATTGCTTTGATTTGGAAGTTTGATTTCGCTCCATTCATGGTTTTAATCATAGCTATTCTAAACGATGGAACAATCATGACCATTTCAAAGGACCGAGTTAAGCCTTCTCCACAGCCCGACAGCTGGAAGTTGAAGGAAATTTTCGCCACTGGCATTGTGTTAGGAGGTTACTTGGCACTGATGACAGTCTTATTCTTCTGGCTCGCGAGAGACACTGACTTTTTCTCGAACAAGTTTCATGTAGAATCCCTGAGGACCAACGACCCGAAAATGACGTCAGCGTTGTATCTACAAGTTAGTATCGTGAGTCAGGCCCTTATTTTTGTCACGAGGTCTCGAAGTTGGTCCTTTGTCGAACGTCCCGGACTTCTCTTAGTGGGCGCCTTCATAATCGCCCAGCTGGTTGCAACTGTAATAGCAGTGTATCCAGAATGGGATTTTGCAAGGATAAATGGCATTGGCTGGGGGTGGGCTGGAGTGATCTGGCTATATAGTTTGATAACTTACATCCCTCTTGATATTCTCAAATTTACCATCCGCTACGCTCTCAGTGGAAGGGCTTGGAACAATCTTCTCCAGAACAAGACTGCTTTCACAACAAAGAAAGATTATGGCAAAGAAGAGAGGGAAGCACAATGGGCTACCACACAAAGGACCATTCATGGTCTTCAACCACCTCAATCCAGCAACGCTCTTTCTGATAGGAACAGTTGCGGGGAGCTTTCCGAAATCGCCGAGCAAGCCAGGCGACGAGCTGAAATTGCAAGGCTTCGTGAGTTGCACACCCTGAAAGGTCGGGTCGAGTCGGTGGTGAAGTTGAAAGGACTAGACATCGACACAATCAATCAACATTATACAGTCTAA | 1974 | 45.95 | MANAITLQEIRNESVDLERIPIGEVFEKLKCSKQGLSSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGRSPDWQDFVGVIALLLINSTISFFEENNAGNAAAALMAGLAPKTKILNLCNSSEVVRRQVHGVIDKFAECGLRSLGVARQEVPEKTKESPGEPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLGQDRSTSTDSVPVDELIETADGFAGVFPEHKYEIVRKLQEKKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWLARDTDFFSNKFHVESLRTNDPKMTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVGAFIIAQLVATVIAVYPEWDFARINGIGWGWAGVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQPPQSSNALSDRNSCGELSEIAEQARRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV | 657 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 42936955 | 42942121 | - | Maker00016686 | Lcy9g1775 | 642891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1775 | 657 | PRINTS | P-type cation-transporting ATPase superfamily signature | 317 | 329 | - | - | |
Lcy9g1775 | 657 | PRINTS | P-type cation-transporting ATPase superfamily signature | 189 | 200 | - | - | |
Lcy9g1775 | 657 | PRINTS | P-type cation-transporting ATPase superfamily signature | 294 | 313 | - | - | |
Lcy9g1775 | 657 | PRINTS | P-type cation-transporting ATPase superfamily signature | 211 | 221 | - | - | |
Lcy9g1775 | 657 | Gene3D | - | 138 | 194 | IPR023299 | GO:0000166(InterPro) | |
Lcy9g1775 | 657 | NCBIfam | HAD-IC family P-type ATPase | 269 | 384 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy9g1775 | 657 | FunFam | ATPase 4 plasma membrane-type | 284 | 521 | - | - | |
Lcy9g1775 | 657 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 82 | IPR004014 | - | |
Lcy9g1775 | 657 | Gene3D | - | 195 | 331 | IPR023214 | - | |
Lcy9g1775 | 657 | PRINTS | H+-transporting ATPase (proton pump) signature | 266 | 282 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy9g1775 | 657 | PRINTS | H+-transporting ATPase (proton pump) signature | 325 | 350 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy9g1775 | 657 | PRINTS | H+-transporting ATPase (proton pump) signature | 294 | 310 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy9g1775 | 657 | PRINTS | H+-transporting ATPase (proton pump) signature | 151 | 169 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy9g1775 | 657 | PRINTS | H+-transporting ATPase (proton pump) signature | 466 | 487 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy9g1775 | 657 | SUPERFAMILY | HAD-like | 186 | 340 | IPR036412 | - | |
Lcy9g1775 | 657 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 16 | 553 | IPR023298 | - | |
Lcy9g1775 | 657 | SMART | Cation_ATPase_N_a_2 | 16 | 88 | IPR004014 | - | |
Lcy9g1775 | 657 | Gene3D | - | 607 | 657 | - | - | |
Lcy9g1775 | 657 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 137 | 200 | IPR023299 | GO:0000166(InterPro) | |
Lcy9g1775 | 657 | FunFam | Plasma membrane ATPase | 186 | 342 | - | - | |
Lcy9g1775 | 657 | Pfam | haloacid dehalogenase-like hydrolase | 146 | 308 | - | - | |
Lcy9g1775 | 657 | Gene3D | - | 95 | 132 | - | - | |
Lcy9g1775 | 657 | Gene3D | - | 332 | 521 | - | - | |
Lcy9g1775 | 657 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 136 | 581 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0298 | Lcy-Chr2:2384611 | Lcy9g1775 | Lcy-Chr9:42936955 | 0 | dispersed | |
Lcy4g1636 | Lcy-Chr4:41309480 | Lcy9g1775 | Lcy-Chr9:42936955 | 2.08E-123 | dispersed | |
Lcy5g2280 | Lcy-Chr5:45789954 | Lcy9g1775 | Lcy-Chr9:42936955 | 0 | dispersed | |
Lcy9g1775 | Lcy-Chr9:42936955 | Lcy9g1776 | Lcy-Chr9:42947610 | 0 | tandem | |
Lcy5g1438 | Lcy-Chr5:34440815 | Lcy9g1775 | Lcy-Chr9:42936955 | 0 | transposed | |
Lcy9g0731 | Lcy-Chr9:24866584 | Lcy9g1775 | Lcy-Chr9:42936955 | 0 | transposed | |
Lcy13g1342 | Lcy-Chr13:31378114 | Lcy9g1775 | Lcy-Chr9:42936955 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1775 | K01535 | - | csv:101219224 | 899.427 |