Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1776 ATGGCGAACGCTATCACTCTCCAAGAGATTCGAAACGAGTCCATCGACCTGGAACGTATTCCAATCGGCGAAGTGTTCGAGAAGTTAAAATGCTCAAAACAAGGTCTCAGTTCAGAGGAAGGAGCCAATCGGCTTCAAGTTTTCGGACCGAACAAACTCGAAGAGAAAAAGGAAAGCAACATTCTGAAATTTCTGGGGTTTATGTGGAATCCCCTCTCTTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTGGCGAACGGCGGTGGAAGGTCTCCGGACTGGCAGGATTTTGTGGGAGTCATTGCCCTGCTTTTGCTCAACTCAACCATCAGTTTTTTTGAAGAAAACAACGCAGGAAATGCAGCTGCAGCCCTTATGGCCGGCCTTGCTCCCAAAACTAAGGTTCAAAACATACTAAACATTACTATCTTAAATCTTTGCAATTCCAGCGAAGTCGTCAGGAGACAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGCGGACTGCGATCCCTGGGTGTTGCTAGACAGGAAGTACCTGAGAAAACCAAAGAAAGTCCAGGAGAACCATGGCAACTTGTTGGATTGTTAGCTCTGTTTGATCCTCCCAGGCTTGATAGTGCAGAAACCATTAGAAGGGCTCTGAACCTTGGAGTAAATGTCAAGATGATCACTGGTGACCAATTGGCCATTGCGAAGGAAACCGGCCGGAGACTTGGTATGGGATCAAATATGTACCCTTCTACTGCATTACTTGGTCAAGACATGAGTACATCAGCAGATTCTGTTCCTGTAGACGAGTTGATTGAAACGGCTGATGGATTTGCTGGTGTATTTCCAGAACATAAATATGAAATTGTGAGAAAGTTACAAGAGAAGAAACACATTTGTGGAATGACGGGTGATGGTGTAAATGACGCCCCTGCACTAAAGAGGGCGGATATTGGAATAGCTGTTGCTGATGCAACCGATGCAGCTAGAGGCGCTTCTGACATCGTCCTCACTGAACCGGGATTGAGCGTCATTATCAGTGCAGTACTGACCAGCAGGGCTATCTTCCAGAGGATGAAGAACTATACGATTTATGCAGTTTCCATCACCATTCGTATAGTGTTTGGTTTTATGATGATTGCTTTGATTTGGAAGTTTGATTTCGCTCCCTTCATGGTTTTAATCATAGCTATTCTAAACGATGGAACAATCATGACCATTTCGAAGGACCGAGTTAAGCCTTCTCCACAGCCCGACAGCTGGAAGTTGAAGGAAATTTTCGCCACTGGCATTGTGTTAGGAGGTTACTTGGCACTAATGACAGTTGTATTCTTCTGGCTCGCGAGAGACACCGACTTTTTCTCAAACAAGTTTCATGTAGAATCGCTGAGGACGAACGACCCGAAAATGATGTCAGCATTGTATCTACAAGTTAGTATCGTGAGTCAGGCCCTTATTTTTGTCTCGAGGTCTCGAAGTTGGTCATTTGTCGAACGTCCTGGACTTCTCTTAGTGGGCGCCTTCATAATCGCCCAGCTGGTTGCAACTCTAATAGCAGTGTATCCAGAATGGGATTTTGCAAGGATAAATGGCATTGGCTGGGGGTGGGCTGGAGTGATCTGGCTATATAGTTTGATAACTTACATCCCTCTTGATATTCTCAAATTTACCATCCGCTATGCTCTCAGTGGAAGGGCTTGGAACAATCTTCTACAGAATAAGACTGCTTTCACAACAAAGAAAGATTATGGCAAAGAAGAGAGGGAAGCACAATGGGCTACCACACAAAGGACCATTCATGGTCTTCAACCACCTCAATCTAGCGACGCTCTTTCTGATAGGAATGGTTGCGGGGAGCTTTCCGAAATTGCCGAGCAAGCCAAGCGACGAGCTGAAATTGCAAGGCTCCGTGAGTTGCACACCCTGAAAGGTCGGGTCGAGTCTGTGGTGAAGTTGAAAGGACTAGACATCGATACAATCAATCAACATTATACAGTCTAA 1998 45.3 MANAITLQEIRNESIDLERIPIGEVFEKLKCSKQGLSSEEGANRLQVFGPNKLEEKKESNILKFLGFMWNPLSWVMEAAAIMAIVLANGGGRSPDWQDFVGVIALLLLNSTISFFEENNAGNAAAALMAGLAPKTKVQNILNITILNLCNSSEVVRRQVHGVIDKFAECGLRSLGVARQEVPEKTKESPGEPWQLVGLLALFDPPRLDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSTALLGQDMSTSADSVPVDELIETADGFAGVFPEHKYEIVRKLQEKKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMMIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVVFFWLARDTDFFSNKFHVESLRTNDPKMMSALYLQVSIVSQALIFVSRSRSWSFVERPGLLLVGAFIIAQLVATLIAVYPEWDFARINGIGWGWAGVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQPPQSSDALSDRNGCGELSEIAEQAKRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42947610 42954673 - Maker00016404 Lcy9g1776 642892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1776 665 Gene3D - 203 339 IPR023214 -
Lcy9g1776 665 PRINTS H+-transporting ATPase (proton pump) signature 333 358 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1776 665 PRINTS H+-transporting ATPase (proton pump) signature 302 318 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1776 665 PRINTS H+-transporting ATPase (proton pump) signature 474 495 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1776 665 PRINTS H+-transporting ATPase (proton pump) signature 159 177 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1776 665 PRINTS H+-transporting ATPase (proton pump) signature 274 290 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1776 665 Gene3D - 144 202 IPR023299 GO:0000166(InterPro)
Lcy9g1776 665 FunFam ATPase 4 plasma membrane-type 292 529 - -
Lcy9g1776 665 PANTHER CALCIUM-TRANSPORTING ATPASE 145 589 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy9g1776 665 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 561 IPR023298 -
Lcy9g1776 665 PRINTS P-type cation-transporting ATPase superfamily signature 325 337 - -
Lcy9g1776 665 PRINTS P-type cation-transporting ATPase superfamily signature 197 208 - -
Lcy9g1776 665 PRINTS P-type cation-transporting ATPase superfamily signature 302 321 - -
Lcy9g1776 665 PRINTS P-type cation-transporting ATPase superfamily signature 219 229 - -
Lcy9g1776 665 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Lcy9g1776 665 NCBIfam HAD-IC family P-type ATPase 277 392 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g1776 665 Gene3D - 34 137 - -
Lcy9g1776 665 Gene3D - 340 529 - -
Lcy9g1776 665 Pfam haloacid dehalogenase-like hydrolase 157 316 - -
Lcy9g1776 665 Gene3D - 616 665 - -
Lcy9g1776 665 FunFam Plasma membrane ATPase 194 350 - -
Lcy9g1776 665 Gene3D - 66 120 - -
Lcy9g1776 665 Pfam Cation transporter/ATPase, N-terminus 20 82 IPR004014 -
Lcy9g1776 665 SUPERFAMILY HAD-like 194 348 IPR036412 -
Lcy9g1776 665 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 145 206 IPR023299 GO:0000166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0731 Lcy-Chr9:24866584 Lcy9g1776 Lcy-Chr9:42947610 0 dispersed
Lcy9g1775 Lcy-Chr9:42936955 Lcy9g1776 Lcy-Chr9:42947610 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1776 K01535 - csv:101219224 900.197