Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1783 ATGCCGGGGCTAACCTGTAATGCCTGTAACAAAGAATTTCTAGACGCCGATGAGCAAAAGCTTCACTACAAATCCGAATGGCATCGATACAATCTTAAGCGCAAGTTTTCGAATTCTAGTGCCCTTAGATGCTCTCGTCTGCTCGAACAGTTTTCAAGTAATAACACCGACTCTTGCATGGACAGTGGCATTGGTGATAGTTGGGGTTGTGGTGTGCATGTTCTGGAAGCACGTATGGAATATGACATGCTTCCGGTAGCTAATGTTCCTGGGGTTACAGAGGCATTATTTTTAGCTAGACAGTCTGCTGCTGCTGCACAAGAGAATGCCAAATCAAAAGAGTCCTCAATGTCATACTCTTGTAGTCTTTGTAGCAAAGCTTACAGGAGCGCTCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATCATCCGCGCTTCGCAAGGAACACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATTTCGAATAAGGTACCTCAACAAAATGAGGAGGAAGAGAGTGAGGAGGAGTGGGAAGAAGTTGATCCTGACGAAGAAATGATCGACGAGGATGAGGGTGAGGATGACGATTCTGATGCCATTGAGGTGGACTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGATAGCTGCATGGTCCACATGCATAAGCAACATGGGTTCTTTATCCCTGATGTCGAATATTTGAAGGATCCGAAAGGCTTCCTTACATACCTAGGCCTGAAGGTGACGAGGGATTTCAGGTGTCTGTACTGCAACGATAATTGTCTTCCATTTGGCAGCTTGGAAGCAGTTAGGAAGCACATGGAAGCGAAAAGCCATTGCAAAGTGCATTATGGTGATGGAGACGAGAATGAAGAAGTAGAATTGGAAGAATTTTATGATTACAGTAGCAGTTATGTGGATGGAAGTGGCAACCAGCTAGTAGCATCAGGGGATGGGGACAATTCTGTTGAACTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAAGAACTAGCGAACGGCAAACGACCAAAACACTTGGTTCCAGGCAATTTCTACGTTATTATCGTCAAAAACCACGACCATCTCCTGCAAATGATTCAGCCATAACTGCTGCATTGGCAGCAAGGTACAGGAGCATGGGATTGGCGACTGTACAATCAAGAGAAAGGATGATCAAGATGAAAGTGATGAAAGAAATCAATCGAACCGGGTTGGAGGCCATGCGTACCAAAATCGGATTGAAGAACAACGTAATTCGAAACCTGCCTAAGAATGTTCCATTCTAG 1332 44.74 MPGLTCNACNKEFLDADEQKLHYKSEWHRYNLKRKFSNSSALRCSRLLEQFSSNNTDSCMDSGIGDSWGCGVHVLEARMEYDMLPVANVPGVTEALFLARQSAAAAQENAKSKESSMSYSCSLCSKAYRSAQAHAQHLKSRSHIIRASQGTHDQEVEKPIIKPLPQRISNKVPQQNEEEESEEEWEEVDPDEEMIDEDEGEDDDSDAIEVDLDPSCCFMCDLEHDTIDSCMVHMHKQHGFFIPDVEYLKDPKGFLTYLGLKVTRDFRCLYCNDNCLPFGSLEAVRKHMEAKSHCKVHYGDGDENEEVELEEFYDYSSSYVDGSGNQLVASGDGDNSVELGSGGAELILVQRTSERQTTKTLGSRQFLRYYRQKPRPSPANDSAITAALAARYRSMGLATVQSRERMIKMKVMKEINRTGLEAMRTKIGLKNNVIRNLPKNVPF 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42992733 42996503 + Maker00016236 Lcy9g1783 642899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1783 443 PANTHER ZINC FINGER PROTEIN 622 1 41 IPR040025 GO:0030687(PANTHER)|GO:0042273(PANTHER)
Lcy9g1783 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 143 IPR013087 -
Lcy9g1783 443 MobiDBLite consensus disorder prediction 177 206 - -
Lcy9g1783 443 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Lcy9g1783 443 ProSitePatterns Zinc finger C2H2 type domain signature. 121 143 IPR013087 -
Lcy9g1783 443 MobiDBLite consensus disorder prediction 164 206 - -
Lcy9g1783 443 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Lcy9g1783 443 SMART ZnF_U1_5 116 150 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy9g1783 443 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy9g1783 443 SMART c2h2final6 4 28 IPR013087 -
Lcy9g1783 443 SMART c2h2final6 266 293 IPR013087 -
Lcy9g1783 443 SMART c2h2final6 215 238 IPR013087 -
Lcy9g1783 443 SMART c2h2final6 119 143 IPR013087 -
Lcy9g1783 443 SUPERFAMILY beta-beta-alpha zinc fingers 114 149 IPR036236 -
Lcy9g1783 443 Pfam C2H2 type zinc-finger (2 copies) 217 319 IPR041661 -
Lcy9g1783 443 SUPERFAMILY beta-beta-alpha zinc fingers 201 275 IPR036236 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1783 K14816 - csv:101219700 624.394