Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1784 ATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGACGACGATTATGACGAGTACGACGATTATGATTATTACGATAACGATTACGACGTAGAAGAAAAAGCAGAAAAAACACCTGAGGCTAAGGAAGAAACAAAGGGGCAAAAGCTTTGGCGATGTCCGATTTGCACTTACGACAATGAAGAAAGTTTTTCTGCATGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGCAAAACTCGTGATGACAGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTTTCCATAATGGCCAAGTCTCTCTTTGCATCGTCGCCAAATCAGATACCCAAAAGGGCTGTAAAATGTTTGGAGGAAAGAGAAGATAAGGAAAGAGAAGATAACATCCACAAGATTGGGAATATCCAGGGCCATTTGCACGAATTCTGTAATGCTCTTAGTACCTGTAGTCATTTCCGCACTAACATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCCAAAGTTGGTTTAAAAGTCGGCCATAAAGACTTCAACTCTTCAGTATTATCTTCAAACATCACTAAGGAAGGTGCAAATAATGCAGCATTGACTTCAAAAAGTGCATATAACTCGTCTGCTGTATTGCCAAAGGGCAAATTAGGCCGTATAGGAGATACAAAGCTGAGTACCAAAAGTTCAGACAGCCCAGGCACCTCAATTGGAAAAAGTACAGTGGTCATTGAAGAGCATAATATGTCAATTAGTGTAACAAAAAATTTACAATCACGTGAGAACAGGTCATCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGACAGCATGGATGAGAGCAGTAACCCTTCTGTGGAGCGGGAAAAGCCCCAAAGTCATGCTGGTAGTTTGAACAACATGGTTCTAAATGTCGAATCTGCCTATGCAAATTATATTAGTGAACTAGGAAAAACATCAAATGTTCTGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATTGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATATTGTTGTGCTCGATTCCCCCGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGACAACACAAGCTGATGCCGCAGTCCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCTGGTATGGACAGTTCAAAGGGGCAAACGAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATCATTGTTGCAGTCAACAAAATGGATGTGGTGGACTATTCCAAAGATCGCTATGACTTTATCAAGCAGCAACTTGGAACATTTTTTCGTTCTTGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGGAAATCAAAATCTGGTGGCTGCCCCTTCTAATGTTCAATTATCGTCCTGGTATCGTGGACCTAATCTTTTGGAGGCAATTGATTCCCTTCAACCACCCACTAGAGATTTCTCAAAGCCTCTGCTTATGCCGATATGCGACGTTGTTAGATCACTTTCACTAGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAGTCATGCCATCTGGAGATAAAGGTACTGTTCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATCGCCAGAGCGGGGGACAATGTGACTGTTAGTCTTCAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAAACATTTGGAATTGAAGATTCTCACCTTGGAATTCGCAACTCCGATACTAATCGGATCTCAGTTGGAAATTCATGTACACCACGTGAAGGAGGCTGCTAGAGTTGCAAGGATAGTGTCATTGCTCGATTCGAAGACGGGAAAGGTCACGAAGAAGGCACCACGTTGTCTCAGTGCGAAACAAAGTGCAGTGATTGAGGTTGTTTTGCAGAGTCCAGTTTGTGTGGAAGCATTCTCGACCAGTCGAGCTCTCGGGCGAGTATTTCTGAGAGCGATGGGCAGAACTATAGCCGTCGGCATTGTGACCCAACTAATCGGAGATCCCGAATAA 2346 43.01 MPRKVSHGLDYDDDYDEYDDYDYYDNDYDVEEKAEKTPEAKEETKGQKLWRCPICTYDNEESFSACDICGVLRNPLVNNSKTRDDRTVENICKDSGVSIMAKSLFASSPNQIPKRAVKCLEEREDKEREDNIHKIGNIQGHLHEFCNALSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVGLKVGHKDFNSSVLSSNITKEGANNAALTSKSAYNSSAVLPKGKLGRIGDTKLSTKSSDSPGTSIGKSTVVIEEHNMSISVTKNLQSRENRSSSTSTSKSAGKFDSMDESSNPSVEREKPQSHAGSLNNMVLNVESAYANYISELGKTSNVLYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHIVVLDSPGHKDFVPNMISGTTQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVDYSKDRYDFIKQQLGTFFRSCGYKDSSLSWIPLSAMGNQNLVAAPSNVQLSSWYRGPNLLEAIDSLQPPTRDFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLVMPSGDKGTVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVAKHLELKILTLEFATPILIGSQLEIHVHHVKEAARVARIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42997900 43005477 - Maker00016951 Lcy9g1784 642900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1784 781 MobiDBLite consensus disorder prediction 227 309 - -
Lcy9g1784 781 ProSiteProfiles Zinc finger RanBP2 type profile. 44 75 IPR001876 -
Lcy9g1784 781 Pfam Elongation factor Tu GTP binding domain 353 572 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g1784 781 Gene3D Translation factors 578 667 - -
Lcy9g1784 781 PANTHER TRANSLATION FACTOR 351 774 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Lcy9g1784 781 MobiDBLite consensus disorder prediction 233 291 - -
Lcy9g1784 781 FunFam elongation factor 1-alpha isoform X4 671 780 - -
Lcy9g1784 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 584 IPR027417 -
Lcy9g1784 781 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 350 581 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g1784 781 FunFam Elongation factor 1 alpha-like protein 343 574 - -
Lcy9g1784 781 CDD HBS1_C_III 668 776 - -
Lcy9g1784 781 Gene3D Translation factors 671 778 - -
Lcy9g1784 781 Pfam GTP-eEF1A C-terminal domain-like 675 774 IPR054696 -
Lcy9g1784 781 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 673 777 IPR009001 -
Lcy9g1784 781 CDD EF1_alpha 354 573 - -
Lcy9g1784 781 ProSitePatterns Zinc finger RanBP2-type signature. 50 69 IPR001876 -
Lcy9g1784 781 FunFam Translation elongation factor EF-1 577 667 - -
Lcy9g1784 781 SUPERFAMILY Ran binding protein zinc finger-like 46 73 IPR036443 -
Lcy9g1784 781 Pfam Elongation factor Tu domain 2 600 663 IPR004161 GO:0005525(InterPro)
Lcy9g1784 781 SUPERFAMILY Translation proteins 572 667 IPR009000 -
Lcy9g1784 781 PRINTS GTP-binding elongation factor signature 449 460 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g1784 781 PRINTS GTP-binding elongation factor signature 354 367 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g1784 781 PRINTS GTP-binding elongation factor signature 413 421 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g1784 781 PRINTS GTP-binding elongation factor signature 494 503 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g1784 781 PRINTS GTP-binding elongation factor signature 433 443 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g1784 781 Gene3D - 344 574 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0471 Lcy-Chr13:5589382 Lcy9g1784 Lcy-Chr9:42997900 3.85E-89 dispersed
Lcy9g1784 Lcy-Chr9:42997900 Lcy8g1885 Lcy-Chr8:45144757 3.67E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1784 K14416 - csv:101219939 1274.23