Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1802 ATGTCGGCGGTGTCTGAAACAAGGTCGCCGTTGCCTTTGCTCTTCCGGCGGCACTCAAGTGGCGAAATAAGAAATTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTGAACGATGGATACTCGCACCTGAACAAGTTCGTTATTGTTCCATATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTGGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGCTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTCGATATCGTGTTGACCTTCTTCGTGGCTTACTTGGATAAAACCACCTATCTCCTTGTTGATGATCATAAGAAGATAGCTGTACGTTACCTTACAAGCCTGGGTTTCCCCATGGACGTAGCCTCCACCCTTCCATTTCAGGTAATATACAGAATTTTCACTGGACAGATGCACCGCAGTGAGGCTTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGCGTTGGTGAACTCTTCTCAAGGCTGGAGAAAGACATACGCTTTAGTTACTTCTTTACAAGACTCGTCAAACTAATTTGTGTTACACTGTTGGCCGTTCATTCAGCTGGTTGTTTCTACTACTGGCTAGCAGTTCGTCATAAAGATTCAGAAAATACATGGATTGGAATTGAAGTCGAAGATTTCGAGAACAGAAGTATCTGGCTTGGGTACACCTATTCCATATATTGGTCCATTGTCACACTTGCTACTGTCGGTTATGGGGATTTGCATGCAGTTAATACAGGAGAGAAGATTTTTAGCATCTTCTACATGCTATTCAACATCGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACAATTATCATGAGGGATTCCATAAATGAGATCCTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTAGCGCACATGCAGCTTAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCTCAGCACCTTTTCCTTCAAACAGTTGAGAAGGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGATATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGATCTCGTACAAGACTGGAACTGAACAGATTTTGGCGAAGCTGGAATCTCCACAGATGGCTGGGGAAATTGCTGTAATGTTGAATATCCCACAGCCATTTACACACTTGAAGGGGTTAAAAAGGGAGGAGCAAAACGAAATACCGTACTTTTCAGAATTGCTGGAAGACCTAAATACAGAGCGTACAGAATCAAATGAGGCACAAAATCAAAGAGTACCAAATTATCAAGGAGATCAAAAAATGGAAGGAATACCCGAAGCATCGAAACCAATGCCACCTAAGGTTCCCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTATGGGAAAGTTGATACTTCTACCTGAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGGGGGAGCTCAATTCTCATGGCTGATGGCTCTAAGGTAGAAGACTTGAATGTTTTAAGAGAGCGTGATCATTTATTCTTTGTTTGA 1785 43.19 MSAVSETRSPLPLLFRRHSSGEIRNLTSVSSSLLPAFGTVVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDIVLTFFVAYLDKTTYLLVDDHKKIAVRYLTSLGFPMDVASTLPFQVIYRIFTGQMHRSEAFGFLNLLRFWRLRRVGELFSRLEKDIRFSYFFTRLVKLICVTLLAVHSAGCFYYWLAVRHKDSENTWIGIEVEDFENRSIWLGYTYSIYWSIVTLATVGYGDLHAVNTGEKIFSIFYMLFNIGLTSYLIGNMTNLIVHSAIRTIIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFLQTVEKAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVISYKTGTEQILAKLESPQMAGEIAVMLNIPQPFTHLKGLKREEQNEIPYFSELLEDLNTERTESNEAQNQRVPNYQGDQKMEGIPEASKPMPPKVPIRVIIHEHHPDESTKDGNSMGKLILLPESIEELFGLAEKRFGKRGSSILMADGSKVEDLNVLRERDHLFFV 594
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 43159089 43168531 + Maker00016110 Lcy9g1802 642918
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1802 594 Pfam KHA, dimerisation domain of potassium ion channel 525 593 IPR021789 -
Lcy9g1802 594 Pfam Cyclic nucleotide-binding domain 400 461 IPR000595 -
Lcy9g1802 594 ProSiteProfiles cAMP/cGMP binding motif profile. 380 461 IPR000595 -
Lcy9g1802 594 SUPERFAMILY cAMP-binding domain-like 309 461 IPR018490 -
Lcy9g1802 594 Coils Coil 477 497 - -
Lcy9g1802 594 SUPERFAMILY Voltage-gated potassium channels 55 303 - -
Lcy9g1802 594 Gene3D - 62 304 - -
Lcy9g1802 594 FunFam Potassium channel KAT2 368 463 - -
Lcy9g1802 594 CDD CAP_ED 380 461 IPR000595 -
Lcy9g1802 594 PANTHER POTASSIUM CHANNEL AKT1 23 461 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Lcy9g1802 594 PRINTS EAG/ELK/ERG potassium channel family signature 294 303 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy9g1802 594 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy9g1802 594 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy9g1802 594 PRINTS EAG/ELK/ERG potassium channel family signature 276 287 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy9g1802 594 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy9g1802 594 PRINTS EAG/ELK/ERG potassium channel family signature 250 267 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lcy9g1802 594 SMART cnmp_10 380 489 IPR000595 -
Lcy9g1802 594 Pfam Ion transport protein 60 304 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy9g1802 594 Gene3D Jelly Rolls 347 488 IPR014710 -
Lcy9g1802 594 ProSiteProfiles KHA domain profile. 525 594 IPR021789 -
Lcy9g1802 594 FunFam Potassium channel KAT3 62 304 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1767 Lcy-Chr5:40356982 Lcy9g1802 Lcy-Chr9:43159089 1.20E-144 dispersed
Lcy6g0568 Lcy-Chr6:5404840 Lcy9g1802 Lcy-Chr9:43159089 1.23E-146 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1802 K21867 - csv:101215177 1064.29