Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1802 | ATGTCGGCGGTGTCTGAAACAAGGTCGCCGTTGCCTTTGCTCTTCCGGCGGCACTCAAGTGGCGAAATAAGAAATTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTGAACGATGGATACTCGCACCTGAACAAGTTCGTTATTGTTCCATATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTGGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGCTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTCGATATCGTGTTGACCTTCTTCGTGGCTTACTTGGATAAAACCACCTATCTCCTTGTTGATGATCATAAGAAGATAGCTGTACGTTACCTTACAAGCCTGGGTTTCCCCATGGACGTAGCCTCCACCCTTCCATTTCAGGTAATATACAGAATTTTCACTGGACAGATGCACCGCAGTGAGGCTTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGCGTTGGTGAACTCTTCTCAAGGCTGGAGAAAGACATACGCTTTAGTTACTTCTTTACAAGACTCGTCAAACTAATTTGTGTTACACTGTTGGCCGTTCATTCAGCTGGTTGTTTCTACTACTGGCTAGCAGTTCGTCATAAAGATTCAGAAAATACATGGATTGGAATTGAAGTCGAAGATTTCGAGAACAGAAGTATCTGGCTTGGGTACACCTATTCCATATATTGGTCCATTGTCACACTTGCTACTGTCGGTTATGGGGATTTGCATGCAGTTAATACAGGAGAGAAGATTTTTAGCATCTTCTACATGCTATTCAACATCGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACAATTATCATGAGGGATTCCATAAATGAGATCCTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTAGCGCACATGCAGCTTAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCTCAGCACCTTTTCCTTCAAACAGTTGAGAAGGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGATATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGATCTCGTACAAGACTGGAACTGAACAGATTTTGGCGAAGCTGGAATCTCCACAGATGGCTGGGGAAATTGCTGTAATGTTGAATATCCCACAGCCATTTACACACTTGAAGGGGTTAAAAAGGGAGGAGCAAAACGAAATACCGTACTTTTCAGAATTGCTGGAAGACCTAAATACAGAGCGTACAGAATCAAATGAGGCACAAAATCAAAGAGTACCAAATTATCAAGGAGATCAAAAAATGGAAGGAATACCCGAAGCATCGAAACCAATGCCACCTAAGGTTCCCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTATGGGAAAGTTGATACTTCTACCTGAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGGGGGAGCTCAATTCTCATGGCTGATGGCTCTAAGGTAGAAGACTTGAATGTTTTAAGAGAGCGTGATCATTTATTCTTTGTTTGA | 1785 | 43.19 | MSAVSETRSPLPLLFRRHSSGEIRNLTSVSSSLLPAFGTVVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDIVLTFFVAYLDKTTYLLVDDHKKIAVRYLTSLGFPMDVASTLPFQVIYRIFTGQMHRSEAFGFLNLLRFWRLRRVGELFSRLEKDIRFSYFFTRLVKLICVTLLAVHSAGCFYYWLAVRHKDSENTWIGIEVEDFENRSIWLGYTYSIYWSIVTLATVGYGDLHAVNTGEKIFSIFYMLFNIGLTSYLIGNMTNLIVHSAIRTIIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFLQTVEKAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVISYKTGTEQILAKLESPQMAGEIAVMLNIPQPFTHLKGLKREEQNEIPYFSELLEDLNTERTESNEAQNQRVPNYQGDQKMEGIPEASKPMPPKVPIRVIIHEHHPDESTKDGNSMGKLILLPESIEELFGLAEKRFGKRGSSILMADGSKVEDLNVLRERDHLFFV | 594 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 43159089 | 43168531 | + | Maker00016110 | Lcy9g1802 | 642918 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1802 | 594 | Pfam | KHA, dimerisation domain of potassium ion channel | 525 | 593 | IPR021789 | - | |
| Lcy9g1802 | 594 | Pfam | Cyclic nucleotide-binding domain | 400 | 461 | IPR000595 | - | |
| Lcy9g1802 | 594 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 461 | IPR000595 | - | |
| Lcy9g1802 | 594 | SUPERFAMILY | cAMP-binding domain-like | 309 | 461 | IPR018490 | - | |
| Lcy9g1802 | 594 | Coils | Coil | 477 | 497 | - | - | |
| Lcy9g1802 | 594 | SUPERFAMILY | Voltage-gated potassium channels | 55 | 303 | - | - | |
| Lcy9g1802 | 594 | Gene3D | - | 62 | 304 | - | - | |
| Lcy9g1802 | 594 | FunFam | Potassium channel KAT2 | 368 | 463 | - | - | |
| Lcy9g1802 | 594 | CDD | CAP_ED | 380 | 461 | IPR000595 | - | |
| Lcy9g1802 | 594 | PANTHER | POTASSIUM CHANNEL AKT1 | 23 | 461 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Lcy9g1802 | 594 | PRINTS | EAG/ELK/ERG potassium channel family signature | 294 | 303 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy9g1802 | 594 | PRINTS | EAG/ELK/ERG potassium channel family signature | 107 | 116 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy9g1802 | 594 | PRINTS | EAG/ELK/ERG potassium channel family signature | 73 | 80 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy9g1802 | 594 | PRINTS | EAG/ELK/ERG potassium channel family signature | 276 | 287 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy9g1802 | 594 | PRINTS | EAG/ELK/ERG potassium channel family signature | 96 | 106 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy9g1802 | 594 | PRINTS | EAG/ELK/ERG potassium channel family signature | 250 | 267 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy9g1802 | 594 | SMART | cnmp_10 | 380 | 489 | IPR000595 | - | |
| Lcy9g1802 | 594 | Pfam | Ion transport protein | 60 | 304 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy9g1802 | 594 | Gene3D | Jelly Rolls | 347 | 488 | IPR014710 | - | |
| Lcy9g1802 | 594 | ProSiteProfiles | KHA domain profile. | 525 | 594 | IPR021789 | - | |
| Lcy9g1802 | 594 | FunFam | Potassium channel KAT3 | 62 | 304 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g1767 | Lcy-Chr5:40356982 | Lcy9g1802 | Lcy-Chr9:43159089 | 1.20E-144 | dispersed | |
| Lcy6g0568 | Lcy-Chr6:5404840 | Lcy9g1802 | Lcy-Chr9:43159089 | 1.23E-146 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g1802 | K21867 | - | csv:101215177 | 1064.29 |