Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1815 ATGAGTAGGGAAAACGTTACTTTTCAAGTTGAAGAGTGCTCTGGCAGAATCACGAGGGCACGGGCAAAAGAGCTAAGCGAATCAGGAGGCATTCTGTGCTCCTCAAAATCTTCTGGAGTTCAGAAGCACATTCTACGACCTAACTCAAAAAGAATTGCATCTGATGAGATTAATATTTGTTCAACTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTAAAGGACGTCACTAACATTTCCAGCAAAGGTTCTGATAAGAGTTGCATTAATACATCTAATATTCAGGGTGCCAAACCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGTGCCTTTAAACGTTTCTGTAGAAATTCTAGGAGCAGAAGAAGATGCAAACACAAGATTAGCCGAGGATTTATCTAAAATAAGGGTGGTAGAATCTCGAGAGGCGTCTTTACGAGAAACTTTGGACGAAAAAGAGAGAACAATGCAAACTGTGTGTAACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGCATCCTCAGAAGAATCTATCCCGCGGCCAAATGGAAAATATATGGCACCGGAACAATCGGGAGCATCAAATGATAGAGGCATTATAGACATTGATTCAAACACAAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGGGTGACGGAGCTTGATCAAAGGGCCTCAACTAACTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATATAAGCTGGTTCCAGATACTTTGTATCTCACTGTGAATGTTATTGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAACGTCTACAACTCCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATACGAGGAGATTTGTGCTCCACGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGGAGAGGTAGTAGAAATGGAGAGTGAAGTTCTGAACTTACTGCACTTTCGGTTATCTGTTCCCACTACAAAGACGTTTCTAAGGAGATTCATACAATCAGCTCACGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGCTTCTGAGCTGAAAACTGCAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATTCGTGAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCGAAATTAACATCCACTCGATCGGTTCTATCACTGTTCTGA 1455 41.17 MSRENVTFQVEECSGRITRARAKELSESGGILCSSKSSGVQKHILRPNSKRIASDEINICSTSSNGLPNKRRAVLKDVTNISSKGSDKSCINTSNIQGAKPTRRVSAKAKANVPLNVSVEILGAEEDANTRLAEDLSKIRVVESREASLRETLDEKERTMQTVCNTSRECGVSDMILSASSEESIPRPNGKYMAPEQSGASNDRGIIDIDSNTKCLQSCSIYAPDIYDRIRVTELDQRASTNYMEQLQQDITANMRGILVDWLVEVSEEYKLVPDTLYLTVNVIDRFLSQNYIEKKRLQLLGVASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNASELKTAVLALQDLQLNTSASSLNAIREKYRQPKFKCVAKLTSTRSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43278052 43284096 - Maker00016641 Lcy9g1815 642931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1815 484 PIRSF Cyclin_A_B_D_E 35 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lcy9g1815 484 FunFam Mitotic cyclin 6 239 339 - -
Lcy9g1815 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Lcy9g1815 484 SUPERFAMILY Cyclin-like 353 476 IPR036915 -
Lcy9g1815 484 FunFam Cyclin A1 341 473 - -
Lcy9g1815 484 Coils Coil 139 159 - -
Lcy9g1815 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Lcy9g1815 484 CDD CYCLIN_AtCycA_like_rpt1 217 350 - -
Lcy9g1815 484 Gene3D - 239 352 - -
Lcy9g1815 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Lcy9g1815 484 SMART Cyclin_C_2 354 477 IPR004367 -
Lcy9g1815 484 SMART cyclin_7 358 446 IPR013763 -
Lcy9g1815 484 SMART cyclin_7 261 345 IPR013763 -
Lcy9g1815 484 Gene3D - 225 473 - -
Lcy9g1815 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy9g1815 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Lcy9g1815 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0192 Lcy-Chr4:2429697 Lcy9g1815 Lcy-Chr9:43278052 3.08E-77 dispersed
Lcy8g2036 Lcy-Chr8:46611979 Lcy9g1815 Lcy-Chr9:43278052 1.10E-43 dispersed
Lcy9g1815 Lcy-Chr9:43278052 Lcy9g2059 Lcy-Chr9:45380665 1.87E-88 dispersed
Lcy10g1245 Lcy-Chr10:35131578 Lcy9g1815 Lcy-Chr9:43278052 1.57E-96 transposed
Lcy3g2082 Lcy-Chr3:47773646 Lcy9g1815 Lcy-Chr9:43278052 3.91E-138 transposed
Lcy13g1311 Lcy-Chr13:30739295 Lcy9g1815 Lcy-Chr9:43278052 9.07E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1815 K06627 - csv:101204275 839.721