Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1815 | ATGAGTAGGGAAAACGTTACTTTTCAAGTTGAAGAGTGCTCTGGCAGAATCACGAGGGCACGGGCAAAAGAGCTAAGCGAATCAGGAGGCATTCTGTGCTCCTCAAAATCTTCTGGAGTTCAGAAGCACATTCTACGACCTAACTCAAAAAGAATTGCATCTGATGAGATTAATATTTGTTCAACTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTAAAGGACGTCACTAACATTTCCAGCAAAGGTTCTGATAAGAGTTGCATTAATACATCTAATATTCAGGGTGCCAAACCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGTGCCTTTAAACGTTTCTGTAGAAATTCTAGGAGCAGAAGAAGATGCAAACACAAGATTAGCCGAGGATTTATCTAAAATAAGGGTGGTAGAATCTCGAGAGGCGTCTTTACGAGAAACTTTGGACGAAAAAGAGAGAACAATGCAAACTGTGTGTAACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGCATCCTCAGAAGAATCTATCCCGCGGCCAAATGGAAAATATATGGCACCGGAACAATCGGGAGCATCAAATGATAGAGGCATTATAGACATTGATTCAAACACAAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGGGTGACGGAGCTTGATCAAAGGGCCTCAACTAACTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATATAAGCTGGTTCCAGATACTTTGTATCTCACTGTGAATGTTATTGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAACGTCTACAACTCCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATACGAGGAGATTTGTGCTCCACGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGGAGAGGTAGTAGAAATGGAGAGTGAAGTTCTGAACTTACTGCACTTTCGGTTATCTGTTCCCACTACAAAGACGTTTCTAAGGAGATTCATACAATCAGCTCACGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGCTTCTGAGCTGAAAACTGCAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATTCGTGAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCGAAATTAACATCCACTCGATCGGTTCTATCACTGTTCTGA | 1455 | 41.17 | MSRENVTFQVEECSGRITRARAKELSESGGILCSSKSSGVQKHILRPNSKRIASDEINICSTSSNGLPNKRRAVLKDVTNISSKGSDKSCINTSNIQGAKPTRRVSAKAKANVPLNVSVEILGAEEDANTRLAEDLSKIRVVESREASLRETLDEKERTMQTVCNTSRECGVSDMILSASSEESIPRPNGKYMAPEQSGASNDRGIIDIDSNTKCLQSCSIYAPDIYDRIRVTELDQRASTNYMEQLQQDITANMRGILVDWLVEVSEEYKLVPDTLYLTVNVIDRFLSQNYIEKKRLQLLGVASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNASELKTAVLALQDLQLNTSASSLNAIREKYRQPKFKCVAKLTSTRSVLSLF | 484 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 43278052 | 43284096 | - | Maker00016641 | Lcy9g1815 | 642931 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1815 | 484 | PIRSF | Cyclin_A_B_D_E | 35 | 483 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Lcy9g1815 | 484 | FunFam | Mitotic cyclin 6 | 239 | 339 | - | - | |
Lcy9g1815 | 484 | Pfam | Cyclin, C-terminal domain | 354 | 475 | IPR004367 | - | |
Lcy9g1815 | 484 | SUPERFAMILY | Cyclin-like | 353 | 476 | IPR036915 | - | |
Lcy9g1815 | 484 | FunFam | Cyclin A1 | 341 | 473 | - | - | |
Lcy9g1815 | 484 | Coils | Coil | 139 | 159 | - | - | |
Lcy9g1815 | 484 | CDD | CYCLIN_AtCycA-like_rpt2 | 354 | 468 | - | - | |
Lcy9g1815 | 484 | CDD | CYCLIN_AtCycA_like_rpt1 | 217 | 350 | - | - | |
Lcy9g1815 | 484 | Gene3D | - | 239 | 352 | - | - | |
Lcy9g1815 | 484 | ProSitePatterns | Cyclins signature. | 256 | 287 | IPR048258 | - | |
Lcy9g1815 | 484 | SMART | Cyclin_C_2 | 354 | 477 | IPR004367 | - | |
Lcy9g1815 | 484 | SMART | cyclin_7 | 358 | 446 | IPR013763 | - | |
Lcy9g1815 | 484 | SMART | cyclin_7 | 261 | 345 | IPR013763 | - | |
Lcy9g1815 | 484 | Gene3D | - | 225 | 473 | - | - | |
Lcy9g1815 | 484 | PANTHER | CYCLINS | 203 | 465 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Lcy9g1815 | 484 | Pfam | Cyclin, N-terminal domain | 225 | 352 | IPR006671 | - | |
Lcy9g1815 | 484 | SUPERFAMILY | Cyclin-like | 217 | 351 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0192 | Lcy-Chr4:2429697 | Lcy9g1815 | Lcy-Chr9:43278052 | 3.08E-77 | dispersed | |
Lcy8g2036 | Lcy-Chr8:46611979 | Lcy9g1815 | Lcy-Chr9:43278052 | 1.10E-43 | dispersed | |
Lcy9g1815 | Lcy-Chr9:43278052 | Lcy9g2059 | Lcy-Chr9:45380665 | 1.87E-88 | dispersed | |
Lcy10g1245 | Lcy-Chr10:35131578 | Lcy9g1815 | Lcy-Chr9:43278052 | 1.57E-96 | transposed | |
Lcy3g2082 | Lcy-Chr3:47773646 | Lcy9g1815 | Lcy-Chr9:43278052 | 3.91E-138 | transposed | |
Lcy13g1311 | Lcy-Chr13:30739295 | Lcy9g1815 | Lcy-Chr9:43278052 | 9.07E-114 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1815 | K06627 | - | csv:101204275 | 839.721 |