Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1819 ATGTCGGGCTCGAACATGGCGGGAGATCTAAGCTCTTGGTCCCACGCGCTCGTCAGAATCTCCCCCTACACCTTCTCCGCCGTCGGCATTGCCATAGCCATCGGCGTCTCTGTCCTCGGAGCCGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCGAAGAATCTAATTAGTGTAATTTTCTGTGAAGCCGTGGCCATATATGGTGTCATTGTGGCCATCATCCTACAAACAAAACTTGAGAGTGTTCCAGCATCTCAAATCTATGCTCCTGAGTCTCTAAGAGCTGGATATTCAATTTTTGCCTCTGGAATTATTGTGGGCTTTGCCAACCTGGTTTGCGGGTTATGTGTAGGGATAATTGGAAGTAGCTGTGCATTGTCTGATGCCCAAAACTCATCCCTTTTTGTGAAGATTCTTGTGATCGAGATCTTTGGTAGCGCACTCGGGTTATTTGGTGTAATTGTAGGAATAATTATGTCTGCTCAAGCTACATGGCCTGCAAAGGCAGTTTAG 549 47.72 MSGSNMAGDLSSWSHALVRISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYAPESLRAGYSIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKAV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43315093 43316714 + Maker00016620 Lcy9g1819 642935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1819 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Lcy9g1819 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Lcy9g1819 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Lcy9g1819 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Lcy9g1819 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lcy9g1819 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lcy9g1819 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Lcy9g1819 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy9g1819 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy9g1819 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy9g1819 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy9g1819 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 11 175 - GO:0016021(PANTHER)
Lcy9g1819 182 Gene3D - 23 178 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1750 Lcy-Chr13:36454459 Lcy9g1819 Lcy-Chr9:43315093 2.30E-99 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1819 K03661 - rcu:8284846 325.094