Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1827 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGTGACACAGTTGGTCTTACGGCCTCTGGTGATGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCTGTTTGTCGTCCGTGTTATGAGTATGAGAGGAAAGATGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGAGTTGATGGTGATGACGATGAGGATGATGTTGATGACATCGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAGGCGAAACGACAGTGGCATGGGGAAGATGCTGAACTATCTACTTCTGCGAGACATGAGTCACAACAGCCTATACCACTCCTTACCAATGGGCAATCAGTGTCGGGTGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAACATATGCACTCACATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTGGACCCATCAAAGGATTTGAACTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAATATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAAGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTCTGAGCCGTGTGGTTCCGATTCCATCCTCTCACTTGACCCCGTACCGTGTTGTGATCATACTTCGACTTATTATTCTGGGGTTTTTCTTACAGTACCGTTTGACGCACCCTGTGAAGGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAGGTTTGGTTTGCCTTATCTTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGTGAGACCTTCCTCGAGAGACTCGCGCTAAGATACGATCGTGAAGGAGAACCATCACAATTAGCTCCTGTTGATGTCTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCTCCGCTCATCACAGCAAACACTGTGCTTTCCATCCTCGCTGTGGACTACCCAGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTCGAAGCACTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTACCCTTTTGCAAGAAGCACAACATCGAACCAAGGGCTCCCGAATTCTATTTTGCTCAAAAAATAGACTACTTAAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGCGCCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGATCAATGCGCTTGTTGCCAAAGCACAGAAGATGCCTGAAGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCTAGGGATCATCCTGGAATGATTCAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAGCACCACAAAAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCAGCCGTGCTTACTAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCTCTGAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTGCAGTTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTCGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCTGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTTTATATGGTTATGATCCGGTTCTGACCGAGGCAGACTTGGAACCAAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGAACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGTGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAAAAGCGCTTTGGCCAATCTCCAGTTTTCATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAAGAAGCAATTCATGTCATCAGTTGTGGGTATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATATCAATTTACTGCATGCCTCCACGCCCAGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTGAACCAAGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTCAGCAGGCATTGTCCCATCTGGTATGGCTACAATGGAAGGCTAAAACTTTTGGAGAGAATAGCATACATCAATACCATCGTCTACCCTATCACATCAATTCCACTTATTGCATACTGTATGCTTCCTGCTTTCTGTCTTTTGACTGGAAAGTTCATCATTCCCGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACTGGTATTCTTGAACTTAGGTGGAGTGGGGTTAGCATTGAGGACTGGTGGAGAAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCAAAGGCCGGTGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCAACCACTGTCCTTATTATGAATATGGTTGGTATAGTGGCAGGTGTTTCATATGCCATTAACAGTGGGTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACGCCCACCATTGTCATTGTCTGGTCCATTCTCCTCGCTTCCATTTTCTCGTTGCTCTGGGTGCGAATCGATCCATTCACCTCGGCCTCAACAAAGGCTGCCAATGGTCAATGTGGCATCAATTGCTAG 3249 45.06 MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKAKRQWHGEDAELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAGDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43369630 43376769 + Maker00016955 Lcy9g1827 642943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1827 1082 Coils Coil 456 476 - -
Lcy9g1827 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
Lcy9g1827 1082 Pfam Cellulose synthase 358 1073 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lcy9g1827 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 265 1051 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy9g1827 1082 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Lcy9g1827 1082 FunFam Cellulose synthase 21 112 - -
Lcy9g1827 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 649 IPR029044 -
Lcy9g1827 1082 CDD mRING-HC-C4C4_CesA 37 87 - -
Lcy9g1827 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Lcy9g1827 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lcy9g1827 1082 FunFam Cellulose synthase 475 649 - -
Lcy9g1827 1082 SUPERFAMILY RING/U-box 22 111 - -
Lcy9g1827 1082 MobiDBLite consensus disorder prediction 74 143 - -
Lcy9g1827 1082 MobiDBLite consensus disorder prediction 161 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1908 Lcy-Chr3:46316711 Lcy9g1827 Lcy-Chr9:43369630 0 dispersed
Lcy5g1811 Lcy-Chr5:40912544 Lcy9g1827 Lcy-Chr9:43369630 0 dispersed
Lcy8g1429 Lcy-Chr8:40931789 Lcy9g1827 Lcy-Chr9:43369630 5.82E-125 dispersed
Lcy9g0447 Lcy-Chr9:12581069 Lcy9g1827 Lcy-Chr9:43369630 0 dispersed
Lcy9g1827 Lcy-Chr9:43369630 Lcy9g2389 Lcy-Chr9:48147611 0 dispersed
Lcy9g1827 Lcy-Chr9:43369630 Lcy1g1957 Lcy-Chr1:23473829 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1827 K10999 - csv:101205724 2198.32