Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1827 | ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGTGACACAGTTGGTCTTACGGCCTCTGGTGATGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCTGTTTGTCGTCCGTGTTATGAGTATGAGAGGAAAGATGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGAGTTGATGGTGATGACGATGAGGATGATGTTGATGACATCGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAGGCGAAACGACAGTGGCATGGGGAAGATGCTGAACTATCTACTTCTGCGAGACATGAGTCACAACAGCCTATACCACTCCTTACCAATGGGCAATCAGTGTCGGGTGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAACATATGCACTCACATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTGGACCCATCAAAGGATTTGAACTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAATATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAAGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTCTGAGCCGTGTGGTTCCGATTCCATCCTCTCACTTGACCCCGTACCGTGTTGTGATCATACTTCGACTTATTATTCTGGGGTTTTTCTTACAGTACCGTTTGACGCACCCTGTGAAGGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAGGTTTGGTTTGCCTTATCTTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGTGAGACCTTCCTCGAGAGACTCGCGCTAAGATACGATCGTGAAGGAGAACCATCACAATTAGCTCCTGTTGATGTCTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCTCCGCTCATCACAGCAAACACTGTGCTTTCCATCCTCGCTGTGGACTACCCAGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTCGAAGCACTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTACCCTTTTGCAAGAAGCACAACATCGAACCAAGGGCTCCCGAATTCTATTTTGCTCAAAAAATAGACTACTTAAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGCGCCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGATCAATGCGCTTGTTGCCAAAGCACAGAAGATGCCTGAAGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCTAGGGATCATCCTGGAATGATTCAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAGCACCACAAAAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCAGCCGTGCTTACTAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCTCTGAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTGCAGTTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTCGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCTGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTTTATATGGTTATGATCCGGTTCTGACCGAGGCAGACTTGGAACCAAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGAACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGTGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAAAAGCGCTTTGGCCAATCTCCAGTTTTCATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAAGAAGCAATTCATGTCATCAGTTGTGGGTATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATATCAATTTACTGCATGCCTCCACGCCCAGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTGAACCAAGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTCAGCAGGCATTGTCCCATCTGGTATGGCTACAATGGAAGGCTAAAACTTTTGGAGAGAATAGCATACATCAATACCATCGTCTACCCTATCACATCAATTCCACTTATTGCATACTGTATGCTTCCTGCTTTCTGTCTTTTGACTGGAAAGTTCATCATTCCCGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACTGGTATTCTTGAACTTAGGTGGAGTGGGGTTAGCATTGAGGACTGGTGGAGAAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCAAAGGCCGGTGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCAACCACTGTCCTTATTATGAATATGGTTGGTATAGTGGCAGGTGTTTCATATGCCATTAACAGTGGGTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACGCCCACCATTGTCATTGTCTGGTCCATTCTCCTCGCTTCCATTTTCTCGTTGCTCTGGGTGCGAATCGATCCATTCACCTCGGCCTCAACAAAGGCTGCCAATGGTCAATGTGGCATCAATTGCTAG | 3249 | 45.06 | MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKAKRQWHGEDAELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAGDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC | 1082 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 43369630 | 43376769 | + | Maker00016955 | Lcy9g1827 | 642943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1827 | 1082 | Coils | Coil | 456 | 476 | - | - | |
Lcy9g1827 | 1082 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 516 | 653 | IPR029044 | - | |
Lcy9g1827 | 1082 | Pfam | Cellulose synthase | 358 | 1073 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Lcy9g1827 | 1082 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 265 | 1051 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Lcy9g1827 | 1082 | Pfam | Zinc-binding RING-finger | 29 | 106 | IPR027934 | - | |
Lcy9g1827 | 1082 | FunFam | Cellulose synthase | 21 | 112 | - | - | |
Lcy9g1827 | 1082 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 376 | 649 | IPR029044 | - | |
Lcy9g1827 | 1082 | CDD | mRING-HC-C4C4_CesA | 37 | 87 | - | - | |
Lcy9g1827 | 1082 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 112 | IPR013083 | - | |
Lcy9g1827 | 1082 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
Lcy9g1827 | 1082 | FunFam | Cellulose synthase | 475 | 649 | - | - | |
Lcy9g1827 | 1082 | SUPERFAMILY | RING/U-box | 22 | 111 | - | - | |
Lcy9g1827 | 1082 | MobiDBLite | consensus disorder prediction | 74 | 143 | - | - | |
Lcy9g1827 | 1082 | MobiDBLite | consensus disorder prediction | 161 | 193 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g1908 | Lcy-Chr3:46316711 | Lcy9g1827 | Lcy-Chr9:43369630 | 0 | dispersed | |
Lcy5g1811 | Lcy-Chr5:40912544 | Lcy9g1827 | Lcy-Chr9:43369630 | 0 | dispersed | |
Lcy8g1429 | Lcy-Chr8:40931789 | Lcy9g1827 | Lcy-Chr9:43369630 | 5.82E-125 | dispersed | |
Lcy9g0447 | Lcy-Chr9:12581069 | Lcy9g1827 | Lcy-Chr9:43369630 | 0 | dispersed | |
Lcy9g1827 | Lcy-Chr9:43369630 | Lcy9g2389 | Lcy-Chr9:48147611 | 0 | dispersed | |
Lcy9g1827 | Lcy-Chr9:43369630 | Lcy1g1957 | Lcy-Chr1:23473829 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1827 | K10999 | - | csv:101205724 | 2198.32 |