Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1835 ATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGACCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGAAGAAGCCAGCCAAGGCCATGGATCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACCAAGCTCAGAAAGTGCTGCAAGAACCCCTCTCCCTCCTTGACATGCCTGCGGCTCGACAGCGACAACGCCCACATCGGCGTCTGGCAGAAGCGCGCAGGCACTCGAGCAGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACTGTCGCCGTCGCCATTGCCATCGCCCGAATTGGCGAGCCAGGAAGCCGATAGCCATCGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAA 579 53.54 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASQGHGSSPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASNWVMRIELGKKETLSPSPLPSPELASQEADSHRNGIDEEDRIAMQMIEELLNWNCPLPSTSS 192
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 43427351 43429631 - Maker00016142 Lcy9g1835 642951
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1835 192 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1835 192 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1835 192 MobiDBLite consensus disorder prediction 59 84 - -
Lcy9g1835 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 IPR050913 -
Lcy9g1835 192 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1835 192 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1835 192 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1835 192 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lcy9g1835 192 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1835 192 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1835 192 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Lcy9g1835 192 MobiDBLite consensus disorder prediction 142 171 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0596 Lcy-Chr12:7356400 Lcy9g1835 Lcy-Chr9:43427351 9.45E-59 dispersed
Lcy9g1835 Lcy-Chr9:43427351 Lcy13g1039 Lcy-Chr13:22711472 1.53E-64 dispersed
Lcy2g0734 Lcy-Chr2:6485901 Lcy9g1835 Lcy-Chr9:43427351 3.66E-72 wgd
Lcy4g2105 Lcy-Chr4:47644326 Lcy9g1835 Lcy-Chr9:43427351 1.34E-70 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20688 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1835 - - - 0.0