Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1867 ATGGCCTATCACAATCACCTCTCTCACGACCTTCCCCTCCACTTTTCCGACCAACAACACCACCACAATCAACCTCTCTCCGACAGCTCCTTCCGCACCATTTTGCCGGACCATCTCGCCGGCGCCCACTCCTCGCCGGACAAATCCCACCACCATCACCATCCGCTGCAGACGGCCGCCCCGAATTGGCTCAACAACGCACTGCTTCGAAACCAAAACCCCCATTCTCACTACTCTACCGACACCGCCGCTGCCGCTGCGCCGGCGGCGAATAATGCCAATGGTAATTTCCTCAACCTCCAAACCGCTGCATCCGATTCCACCGTGTCTCATTCATCTAACCAACAGCTCTCCCGCCCGATCCTCCATCGAAACCATAGCGATGTCATCGATGACGTCGCCACCGCTGCGCTCTCTCACGATTCCAGCGACCTGAAGAACGACGCCAATAGCGGCGACGGGTTGAACAGGAGCGAGGGTATGGCGATGGAACCTGGCGGTGGTGGAGATGGGGTTTTGAATTGGCAACATGCTCGTTACAAGGGCGAGATTCTCGCTCATCCTATTTATGAACAGCTTGTTTCCGCTCATGTGGCTTGTCTTCGCATCGCAACGCCCGTTGACCAATTGCCGAGGATTGACGCTCAGCTTGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCGGCCTTGGGCCATACTTCTCCGCCCATGGCTGGCGATGACAAAGAGCTCGATCAGTTCATGACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCAGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGACATTGAGCAGTCTCTGCAAAGCTTAATAGGAGTTTCACTTGGAGAAGGTACAGGAGCGACAATGTCGGACGACGAGGAGGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTCCAGACACCTTGGGATTTGGCCCTCTTATTCTCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGGAGAGCAGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGCTCTACAAACTTGAAAAGCAAACGCAAAAGAAGTACTGCAGGTGAAAACAGCAGTGACCATTTCAAATGA 1368 51.02 MAYHNHLSHDLPLHFSDQQHHHNQPLSDSSFRTILPDHLAGAHSSPDKSHHHHHPLQTAAPNWLNNALLRNQNPHSHYSTDTAAAAAPAANNANGNFLNLQTAASDSTVSHSSNQQLSRPILHRNHSDVIDDVATAALSHDSSDLKNDANSGDGLNRSEGMAMEPGGGGDGVLNWQHARYKGEILAHPIYEQLVSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTSPPMAGDDKELDQFMTHYVLLLCSFKEQLQQHVQVHAMEAVMACWDIEQSLQSLIGVSLGEGTGATMSDDEEDQVDSDANLFDGSLEGPDTLGFGPLILTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSTAGENSSDHFK 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43706358 43710444 - Maker00016805 Lcy9g1867 642983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1867 455 CDD homeodomain 369 430 IPR001356 GO:0003677(InterPro)
Lcy9g1867 455 MobiDBLite consensus disorder prediction 140 154 - -
Lcy9g1867 455 MobiDBLite consensus disorder prediction 423 455 - -
Lcy9g1867 455 Pfam ELK domain 346 367 IPR005539 GO:0003677(InterPro)
Lcy9g1867 455 Pfam KNOX2 domain 239 287 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1867 455 MobiDBLite consensus disorder prediction 441 455 - -
Lcy9g1867 455 SMART ELK_2 346 367 IPR005539 GO:0003677(InterPro)
Lcy9g1867 455 MobiDBLite consensus disorder prediction 140 168 - -
Lcy9g1867 455 Pfam KNOX1 domain 180 221 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1867 455 ProSiteProfiles ELK domain profile. 346 366 IPR005539 GO:0003677(InterPro)
Lcy9g1867 455 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677(InterPro)
Lcy9g1867 455 SUPERFAMILY Homeodomain-like 368 432 IPR009057 -
Lcy9g1867 455 Gene3D - 367 428 - -
Lcy9g1867 455 SMART HOX_1 368 433 IPR001356 GO:0003677(InterPro)
Lcy9g1867 455 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 432 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy9g1867 455 SMART KNOX1_2 178 222 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1867 455 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy9g1867 455 SMART KNOX2_2 234 289 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1867 455 FunFam homeobox protein knotted-1-like 3 isoform X1 367 428 - -
Lcy9g1867 455 MobiDBLite consensus disorder prediction 423 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1867 Lcy-Chr9:43706358 Lcy9g1996 Lcy-Chr9:44828107 2.47E-30 dispersed
Lcy9g1867 Lcy-Chr9:43706358 Lcy9g1869 Lcy-Chr9:43718880 4.41E-273 proximal
Lcy12g1713 Lcy-Chr12:37656975 Lcy9g1867 Lcy-Chr9:43706358 3.60E-120 transposed
Lcy13g1811 Lcy-Chr13:37054816 Lcy9g1867 Lcy-Chr9:43706358 1.11E-189 wgd
Lcy2g0672 Lcy-Chr2:5747501 Lcy9g1867 Lcy-Chr9:43706358 9.87E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20691 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1867 - - - 0.0