Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1867 | ATGGCCTATCACAATCACCTCTCTCACGACCTTCCCCTCCACTTTTCCGACCAACAACACCACCACAATCAACCTCTCTCCGACAGCTCCTTCCGCACCATTTTGCCGGACCATCTCGCCGGCGCCCACTCCTCGCCGGACAAATCCCACCACCATCACCATCCGCTGCAGACGGCCGCCCCGAATTGGCTCAACAACGCACTGCTTCGAAACCAAAACCCCCATTCTCACTACTCTACCGACACCGCCGCTGCCGCTGCGCCGGCGGCGAATAATGCCAATGGTAATTTCCTCAACCTCCAAACCGCTGCATCCGATTCCACCGTGTCTCATTCATCTAACCAACAGCTCTCCCGCCCGATCCTCCATCGAAACCATAGCGATGTCATCGATGACGTCGCCACCGCTGCGCTCTCTCACGATTCCAGCGACCTGAAGAACGACGCCAATAGCGGCGACGGGTTGAACAGGAGCGAGGGTATGGCGATGGAACCTGGCGGTGGTGGAGATGGGGTTTTGAATTGGCAACATGCTCGTTACAAGGGCGAGATTCTCGCTCATCCTATTTATGAACAGCTTGTTTCCGCTCATGTGGCTTGTCTTCGCATCGCAACGCCCGTTGACCAATTGCCGAGGATTGACGCTCAGCTTGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCGGCCTTGGGCCATACTTCTCCGCCCATGGCTGGCGATGACAAAGAGCTCGATCAGTTCATGACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCAGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGACATTGAGCAGTCTCTGCAAAGCTTAATAGGAGTTTCACTTGGAGAAGGTACAGGAGCGACAATGTCGGACGACGAGGAGGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTCCAGACACCTTGGGATTTGGCCCTCTTATTCTCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGGAGAGCAGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGCTCTACAAACTTGAAAAGCAAACGCAAAAGAAGTACTGCAGGTGAAAACAGCAGTGACCATTTCAAATGA | 1368 | 51.02 | MAYHNHLSHDLPLHFSDQQHHHNQPLSDSSFRTILPDHLAGAHSSPDKSHHHHHPLQTAAPNWLNNALLRNQNPHSHYSTDTAAAAAPAANNANGNFLNLQTAASDSTVSHSSNQQLSRPILHRNHSDVIDDVATAALSHDSSDLKNDANSGDGLNRSEGMAMEPGGGGDGVLNWQHARYKGEILAHPIYEQLVSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTSPPMAGDDKELDQFMTHYVLLLCSFKEQLQQHVQVHAMEAVMACWDIEQSLQSLIGVSLGEGTGATMSDDEEDQVDSDANLFDGSLEGPDTLGFGPLILTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSTAGENSSDHFK | 455 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 43706358 | 43710444 | - | Maker00016805 | Lcy9g1867 | 642983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1867 | 455 | CDD | homeodomain | 369 | 430 | IPR001356 | GO:0003677(InterPro) | |
Lcy9g1867 | 455 | MobiDBLite | consensus disorder prediction | 140 | 154 | - | - | |
Lcy9g1867 | 455 | MobiDBLite | consensus disorder prediction | 423 | 455 | - | - | |
Lcy9g1867 | 455 | Pfam | ELK domain | 346 | 367 | IPR005539 | GO:0003677(InterPro) | |
Lcy9g1867 | 455 | Pfam | KNOX2 domain | 239 | 287 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g1867 | 455 | MobiDBLite | consensus disorder prediction | 441 | 455 | - | - | |
Lcy9g1867 | 455 | SMART | ELK_2 | 346 | 367 | IPR005539 | GO:0003677(InterPro) | |
Lcy9g1867 | 455 | MobiDBLite | consensus disorder prediction | 140 | 168 | - | - | |
Lcy9g1867 | 455 | Pfam | KNOX1 domain | 180 | 221 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g1867 | 455 | ProSiteProfiles | ELK domain profile. | 346 | 366 | IPR005539 | GO:0003677(InterPro) | |
Lcy9g1867 | 455 | ProSiteProfiles | 'Homeobox' domain profile. | 366 | 429 | IPR001356 | GO:0003677(InterPro) | |
Lcy9g1867 | 455 | SUPERFAMILY | Homeodomain-like | 368 | 432 | IPR009057 | - | |
Lcy9g1867 | 455 | Gene3D | - | 367 | 428 | - | - | |
Lcy9g1867 | 455 | SMART | HOX_1 | 368 | 433 | IPR001356 | GO:0003677(InterPro) | |
Lcy9g1867 | 455 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 115 | 432 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lcy9g1867 | 455 | SMART | KNOX1_2 | 178 | 222 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g1867 | 455 | Pfam | Homeobox KN domain | 386 | 425 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy9g1867 | 455 | SMART | KNOX2_2 | 234 | 289 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g1867 | 455 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 367 | 428 | - | - | |
Lcy9g1867 | 455 | MobiDBLite | consensus disorder prediction | 423 | 440 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy9g1867 | Lcy-Chr9:43706358 | Lcy9g1996 | Lcy-Chr9:44828107 | 2.47E-30 | dispersed | |
Lcy9g1867 | Lcy-Chr9:43706358 | Lcy9g1869 | Lcy-Chr9:43718880 | 4.41E-273 | proximal | |
Lcy12g1713 | Lcy-Chr12:37656975 | Lcy9g1867 | Lcy-Chr9:43706358 | 3.60E-120 | transposed | |
Lcy13g1811 | Lcy-Chr13:37054816 | Lcy9g1867 | Lcy-Chr9:43706358 | 1.11E-189 | wgd | |
Lcy2g0672 | Lcy-Chr2:5747501 | Lcy9g1867 | Lcy-Chr9:43706358 | 9.87E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20691 | None | None | None | None | Lcy | TF |
Pathway information
