Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1869 ATGGCCTATCACAATCACCTCTCTCAGGACCTTCCCCTCCACTTTTCCGACCAACAACACCACCACAATCAGCCTCTCTCTGACACCTCCTTGCGCACCATTTTGCCGGACCAGCTCGCCGCCGCCCACTCCTCGCCGGACCCCAAATCCCACCACCATCACCATCCGCTGCAGACGGCCCCGAATTGGCTCAACAACGCACTGCTTCGAAACCAAAACCCCCATTCTCACTACTCTACCGACACCGCCACCACTGCCGCCGCTGCCGCGGCGGCGGCGGCCAACAACGCCAATACTAATTTCCTCAACCTTCATACCACTGCATCCGATTCCGCCGTGTCTCACTCATCTAACCAATGGCTCTCCCGCCCGATCCTCCATCGAAACCACAGCGATGTCATCGACGATGTCGCCGCCGCTGCCGGCGACGCTATGATCGGTGCCGCTACCGCTGCGCTCTCTCATGATTCCGGCGACCTGAAGAACGACGCCAATAGCGGCGACGGGTTGAACAAGAGCGAGGGTATGGTGATGGAACCTGGCGGCGGTGGAGACGGGGTTTTGAATTGGCAACATGCTCGTTACAAAGGCGAGATTCTCGCTCATCCTCTTTATGAACAGCTTCTTTCCGCTCATGTTGCTTGTCTTCGCATCGCGACGCCCGTCGACCAATTGCCGAGGATTGACGCTCAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCGGCCTTGGGCCACACTGCTCCGCCCATGGTTGGCGATGACAAAGAGCTCGATCAGTTCATGTCTTTGTTCGCCTGGAATTCTGATGCTTTACTTTGCTGCATGACCCCTGCAGGGTTCCTTTTAGTTTCTTTGTTTCCCCAATTGGAATGTGTCCTTAATACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCGACAATGTCGGACGACGACGACGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAGCGGGTTACAAGGAGAAAATTGTGGACATAAGGGAAGAGATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGCTCATTTAAAGCTTGCAAAACAAACATAGTTATTTCTTCGCCCGAAGAAGTTAGGGATGGAAAATGGGACGAGGATGGGGACGGAGAAATATATGCTGTGTGA 1575 51.49 MAYHNHLSQDLPLHFSDQQHHHNQPLSDTSLRTILPDQLAAAHSSPDPKSHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTATTAAAAAAAAANNANTNFLNLHTTASDSAVSHSSNQWLSRPILHRNHSDVIDDVAAAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGGGGDGVLNWQHARYKGEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPPMVGDDKELDQFMSLFAWNSDALLCCMTPAGFLLVSLFPQLECVLNTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSSFKACKTNIVISSPEEVRDGKWDEDGDGEIYAV 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43718880 43723160 - Maker00016760 Lcy9g1869 642985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1869 524 SUPERFAMILY Homeodomain-like 416 481 IPR009057 -
Lcy9g1869 524 FunFam homeobox protein knotted-1-like 3 isoform X1 415 476 - -
Lcy9g1869 524 SMART ELK_2 394 415 IPR005539 GO:0003677(InterPro)
Lcy9g1869 524 Gene3D - 415 476 - -
Lcy9g1869 524 ProSiteProfiles 'Homeobox' domain profile. 414 477 IPR001356 GO:0003677(InterPro)
Lcy9g1869 524 SMART KNOX2_2 249 337 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1869 524 Pfam KNOX1 domain 195 236 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1869 524 Pfam KNOX2 domain 298 336 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1869 524 ProSiteProfiles ELK domain profile. 394 414 IPR005539 GO:0003677(InterPro)
Lcy9g1869 524 SMART KNOX1_2 193 237 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1869 524 MobiDBLite consensus disorder prediction 39 59 - -
Lcy9g1869 524 Pfam ELK domain 394 415 IPR005539 GO:0003677(InterPro)
Lcy9g1869 524 Pfam Homeobox KN domain 434 473 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy9g1869 524 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 208 477 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy9g1869 524 CDD homeodomain 417 478 IPR001356 GO:0003677(InterPro)
Lcy9g1869 524 SMART HOX_1 416 481 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1713 Lcy-Chr12:37656975 Lcy9g1869 Lcy-Chr9:43718880 1.54E-116 dispersed
Lcy13g1811 Lcy-Chr13:37054816 Lcy9g1869 Lcy-Chr9:43718880 3.40E-196 dispersed
Lcy9g1869 Lcy-Chr9:43718880 Lcy9g1996 Lcy-Chr9:44828107 9.76E-24 dispersed
Lcy9g1867 Lcy-Chr9:43706358 Lcy9g1869 Lcy-Chr9:43718880 4.41E-273 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20692 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1869 - - - 0.0