Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1869 | ATGGCCTATCACAATCACCTCTCTCAGGACCTTCCCCTCCACTTTTCCGACCAACAACACCACCACAATCAGCCTCTCTCTGACACCTCCTTGCGCACCATTTTGCCGGACCAGCTCGCCGCCGCCCACTCCTCGCCGGACCCCAAATCCCACCACCATCACCATCCGCTGCAGACGGCCCCGAATTGGCTCAACAACGCACTGCTTCGAAACCAAAACCCCCATTCTCACTACTCTACCGACACCGCCACCACTGCCGCCGCTGCCGCGGCGGCGGCGGCCAACAACGCCAATACTAATTTCCTCAACCTTCATACCACTGCATCCGATTCCGCCGTGTCTCACTCATCTAACCAATGGCTCTCCCGCCCGATCCTCCATCGAAACCACAGCGATGTCATCGACGATGTCGCCGCCGCTGCCGGCGACGCTATGATCGGTGCCGCTACCGCTGCGCTCTCTCATGATTCCGGCGACCTGAAGAACGACGCCAATAGCGGCGACGGGTTGAACAAGAGCGAGGGTATGGTGATGGAACCTGGCGGCGGTGGAGACGGGGTTTTGAATTGGCAACATGCTCGTTACAAAGGCGAGATTCTCGCTCATCCTCTTTATGAACAGCTTCTTTCCGCTCATGTTGCTTGTCTTCGCATCGCGACGCCCGTCGACCAATTGCCGAGGATTGACGCTCAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCGGCCTTGGGCCACACTGCTCCGCCCATGGTTGGCGATGACAAAGAGCTCGATCAGTTCATGTCTTTGTTCGCCTGGAATTCTGATGCTTTACTTTGCTGCATGACCCCTGCAGGGTTCCTTTTAGTTTCTTTGTTTCCCCAATTGGAATGTGTCCTTAATACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCGACAATGTCGGACGACGACGACGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAGCGGGTTACAAGGAGAAAATTGTGGACATAAGGGAAGAGATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGCTCATTTAAAGCTTGCAAAACAAACATAGTTATTTCTTCGCCCGAAGAAGTTAGGGATGGAAAATGGGACGAGGATGGGGACGGAGAAATATATGCTGTGTGA | 1575 | 51.49 | MAYHNHLSQDLPLHFSDQQHHHNQPLSDTSLRTILPDQLAAAHSSPDPKSHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTATTAAAAAAAAANNANTNFLNLHTTASDSAVSHSSNQWLSRPILHRNHSDVIDDVAAAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGGGGDGVLNWQHARYKGEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPPMVGDDKELDQFMSLFAWNSDALLCCMTPAGFLLVSLFPQLECVLNTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSSFKACKTNIVISSPEEVRDGKWDEDGDGEIYAV | 524 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 43718880 | 43723160 | - | Maker00016760 | Lcy9g1869 | 642985 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1869 | 524 | SUPERFAMILY | Homeodomain-like | 416 | 481 | IPR009057 | - | |
Lcy9g1869 | 524 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 415 | 476 | - | - | |
Lcy9g1869 | 524 | SMART | ELK_2 | 394 | 415 | IPR005539 | GO:0003677(InterPro) | |
Lcy9g1869 | 524 | Gene3D | - | 415 | 476 | - | - | |
Lcy9g1869 | 524 | ProSiteProfiles | 'Homeobox' domain profile. | 414 | 477 | IPR001356 | GO:0003677(InterPro) | |
Lcy9g1869 | 524 | SMART | KNOX2_2 | 249 | 337 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g1869 | 524 | Pfam | KNOX1 domain | 195 | 236 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g1869 | 524 | Pfam | KNOX2 domain | 298 | 336 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g1869 | 524 | ProSiteProfiles | ELK domain profile. | 394 | 414 | IPR005539 | GO:0003677(InterPro) | |
Lcy9g1869 | 524 | SMART | KNOX1_2 | 193 | 237 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g1869 | 524 | MobiDBLite | consensus disorder prediction | 39 | 59 | - | - | |
Lcy9g1869 | 524 | Pfam | ELK domain | 394 | 415 | IPR005539 | GO:0003677(InterPro) | |
Lcy9g1869 | 524 | Pfam | Homeobox KN domain | 434 | 473 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy9g1869 | 524 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 208 | 477 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lcy9g1869 | 524 | CDD | homeodomain | 417 | 478 | IPR001356 | GO:0003677(InterPro) | |
Lcy9g1869 | 524 | SMART | HOX_1 | 416 | 481 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1713 | Lcy-Chr12:37656975 | Lcy9g1869 | Lcy-Chr9:43718880 | 1.54E-116 | dispersed | |
Lcy13g1811 | Lcy-Chr13:37054816 | Lcy9g1869 | Lcy-Chr9:43718880 | 3.40E-196 | dispersed | |
Lcy9g1869 | Lcy-Chr9:43718880 | Lcy9g1996 | Lcy-Chr9:44828107 | 9.76E-24 | dispersed | |
Lcy9g1867 | Lcy-Chr9:43706358 | Lcy9g1869 | Lcy-Chr9:43718880 | 4.41E-273 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20692 | None | None | None | None | Lcy | TF |
Pathway information
