Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1874 ATGGCTCCGCGATTGCCGTCTTTGAAGACGAGGATTTGGCTGGGAACCTTCGAGACGGCGGAGGATGCAGCGAGGGCTTACGATGAAGCTGCGAGATTGATGTGTGGCCCAAAGGCAAGAACGAATTTCCCGTACGATCCGAATGCGATTCGTTCGTCGAATTCTAGGATTTTGTCGGCAAATTTGACTGCGAAATTGCATAGGTGTTACATGGCTTCTCTGCAGATCAGTAACCAGGCTTCGCGGGAGTTTGAAAGAGGAATTCCGCCGCCGTTTCCGCCGGCGCTGGCGCCGGTTTTTGCTGGTGGGGCGAGTTCGGTGGTGGAGGAGATTAGACCGACGGCGGTGATGGCGACGGAGCAAGCGCCGTGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAACTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTTCGTCTCCCTCTTTCTCAACAACCCTCTAAGACGATATCCCATATCTCTCTACTCTCTCTTTCTGTCTCTCCTCGTCGGCGTCGTTGCTCGTGGTTTCCTCGACGGCGCCATTGCTCGTGCTCGTGCTCTCCTCGCCGGCGTCAGTTTTAGATTTACATGGAAACAAACCCATTGTTCGTGCTCATTGTCTCCTCGCGCGGCGTTGGTTTTAGATTTACATGGAAACAAATCCATTGTTCGTGCTCGTGGTTTCCTCGCTGGCGCCATTGCTTGTGCTCATGCAGGCTCGATTTCTCCTCGTCGGTGTCATTGCTCATGCTCGTGGTCTCCTCGTCGGCGTTGGTTTTAG 846 52.13 MAPRLPSLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYDPNAIRSSNSRILSANLTAKLHRCYMASLQISNQASREFERGIPPPFPPALAPVFAGGASSVVEEIRPTAVMATEQAPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFFVSLFLNNPLRRYPISLYSLFLSLLVGVVARGFLDGAIARARALLAGVSFRFTWKQTHCSCSLSPRAALVLDLHGNKSIVRARGFLAGAIACAHAGSISPRRCHCSCSWSPRRRWF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43776258 43778914 + Maker00016968 Lcy9g1874 642990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1874 281 ProSiteProfiles AP2/ERF domain profile. 1 44 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1874 281 Gene3D AP2/ERF domain 3 45 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1874 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 102 IPR050913 -
Lcy9g1874 281 SMART rav1_2 4 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1874 281 SUPERFAMILY DNA-binding domain 9 45 IPR016177 GO:0003677(InterPro)
Lcy9g1874 281 CDD AP2 4 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2003 Lcy-Chr3:47149230 Lcy9g1874 Lcy-Chr9:43776258 6.65E-35 dispersed
Lcy9g1874 Lcy-Chr9:43776258 Lcy12g0596 Lcy-Chr12:7356400 5.51E-15 dispersed
Lcy12g0538 Lcy-Chr12:6576075 Lcy9g1874 Lcy-Chr9:43776258 1.69E-21 wgd
Lcy13g1816 Lcy-Chr13:37121738 Lcy9g1874 Lcy-Chr9:43776258 5.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20693 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1874 - - - 0.0