Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1874 | ATGGCTCCGCGATTGCCGTCTTTGAAGACGAGGATTTGGCTGGGAACCTTCGAGACGGCGGAGGATGCAGCGAGGGCTTACGATGAAGCTGCGAGATTGATGTGTGGCCCAAAGGCAAGAACGAATTTCCCGTACGATCCGAATGCGATTCGTTCGTCGAATTCTAGGATTTTGTCGGCAAATTTGACTGCGAAATTGCATAGGTGTTACATGGCTTCTCTGCAGATCAGTAACCAGGCTTCGCGGGAGTTTGAAAGAGGAATTCCGCCGCCGTTTCCGCCGGCGCTGGCGCCGGTTTTTGCTGGTGGGGCGAGTTCGGTGGTGGAGGAGATTAGACCGACGGCGGTGATGGCGACGGAGCAAGCGCCGTGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAACTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTTCGTCTCCCTCTTTCTCAACAACCCTCTAAGACGATATCCCATATCTCTCTACTCTCTCTTTCTGTCTCTCCTCGTCGGCGTCGTTGCTCGTGGTTTCCTCGACGGCGCCATTGCTCGTGCTCGTGCTCTCCTCGCCGGCGTCAGTTTTAGATTTACATGGAAACAAACCCATTGTTCGTGCTCATTGTCTCCTCGCGCGGCGTTGGTTTTAGATTTACATGGAAACAAATCCATTGTTCGTGCTCGTGGTTTCCTCGCTGGCGCCATTGCTTGTGCTCATGCAGGCTCGATTTCTCCTCGTCGGTGTCATTGCTCATGCTCGTGGTCTCCTCGTCGGCGTTGGTTTTAG | 846 | 52.13 | MAPRLPSLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYDPNAIRSSNSRILSANLTAKLHRCYMASLQISNQASREFERGIPPPFPPALAPVFAGGASSVVEEIRPTAVMATEQAPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFFVSLFLNNPLRRYPISLYSLFLSLLVGVVARGFLDGAIARARALLAGVSFRFTWKQTHCSCSLSPRAALVLDLHGNKSIVRARGFLAGAIACAHAGSISPRRCHCSCSWSPRRRWF | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 43776258 | 43778914 | + | Maker00016968 | Lcy9g1874 | 642990 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1874 | 281 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 44 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1874 | 281 | Gene3D | AP2/ERF domain | 3 | 45 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1874 | 281 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 6 | 102 | IPR050913 | - | |
Lcy9g1874 | 281 | SMART | rav1_2 | 4 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1874 | 281 | SUPERFAMILY | DNA-binding domain | 9 | 45 | IPR016177 | GO:0003677(InterPro) | |
Lcy9g1874 | 281 | CDD | AP2 | 4 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g2003 | Lcy-Chr3:47149230 | Lcy9g1874 | Lcy-Chr9:43776258 | 6.65E-35 | dispersed | |
Lcy9g1874 | Lcy-Chr9:43776258 | Lcy12g0596 | Lcy-Chr12:7356400 | 5.51E-15 | dispersed | |
Lcy12g0538 | Lcy-Chr12:6576075 | Lcy9g1874 | Lcy-Chr9:43776258 | 1.69E-21 | wgd | |
Lcy13g1816 | Lcy-Chr13:37121738 | Lcy9g1874 | Lcy-Chr9:43776258 | 5.20E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20693 | None | None | None | None | Lcy | TF |
Pathway information
