Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1879 ATGACGGTTGAGCCGAGAGTCGACGACCCAAATGACCAATTTCCGGCTGGAATGCGTGTTCTCGCCGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACAAATCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGACTGGAGATGGATCTACCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTCATGAAAGGGATTACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATCGAGGAGCTAAAAAACATTTGGCAGCATGTAATCAGGAGGAAGAAATTTGATCCAAAGGACCGGATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAGAATGAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGCGGAATTGGGAATTTCCATTCTTTGACAGGACCTCCGCAGTTCCCCAACACTGGTTATAGATCTATCCCAACTAGTGGGATGCTTGGTCGATTGAATACTCCTGCCTGTATGGGTATGCATGGCCTTTCTTCCCCAGGAACAGTTCAACTGGGTAATTTGAACAATTCAAGCAATGATCAGTCTACATTTCAGCCAATCATGCTTTCTGGAAACCGAAGTGGGAATATTTTCCGGGGAATGCCAGAGCCATCAGAACTTGATCAGCTACAACATGTTAAACATGGGACCCATGTGGACAATCTCTCTCCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTTCCAAATGCAAACATGTCTGCTGGTACTTTGAGTAATTCTCTTTTAGGATTAACGAATGATCCCTTGATTTCAGAAGTACAGCATCATGAAGTGCATGGTGGTAGAAAATTTGGACCTCAATCTTCCATTTCTGTAGTATCTTCAAACTTGGAAAGTTCACGTCCTTCACTAGATAATGTTAGATGCACTGGTGACAATTGGTCGAAAGCTGCTCATTCATCTAGGATCCACTCGAATACTATTCCGTCTAGCAACCTTTCTAATATTGCTACTTCCTACCATAGCCAGTTGAGGGACAATACTACCAGTGCATTGCATATGGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCGAGGACAGATTCTCAACGTCAAGCAGCCACAACTAGCAATAGATATGATCAAATAATCACAAAGGTTCCTCTTCAAGATTGGAATGATCATAAAGAGGATGCATATTACCACACAAATGTGGCCTGTAGCTCATCAAATTCTTTGATACCTGTGAATGGTGCTGCAGAGACATTACCCAAACATTTGGAAAATCAGAACACAATCTTCTCTGGAAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGACCATGCAATGGTGGAACATGATCAATTCAAGAAATCAGCTATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAAGCTAGATTTTCTTCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGAGGAAGATGATGGAAAGTTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATTGGAACGTGCATGTGA 1881 42.11 MTVEPRVDDPNDQFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENEAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTGYRSIPTSGMLGRLNTPACMGMHGLSSPGTVQLGNLNNSSNDQSTFQPIMLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDNLSPAFDERTVFPASIGLPNANMSAGTLSNSLLGLTNDPLISEVQHHEVHGGRKFGPQSSISVVSSNLESSRPSLDNVRCTGDNWSKAAHSSRIHSNTIPSSNLSNIATSYHSQLRDNTTSALHMGNCLSDISSITSISTQSHDSRTDSQRQAATTSNRYDQIITKVPLQDWNDHKEDAYYHTNVACSSSNSLIPVNGAAETLPKHLENQNTIFSGSKDFNVTSQANVLDHAMVEHDQFKKSAMETSLMLKQGYLYDHQQKMQARFSSSNCGSLEDIACAMMKQEEDDGKLLEGDFGCDNYPIGTCM 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43815993 43821001 + Maker00016652 Lcy9g1879 642995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1879 626 PIRSF RR_ARR_type-B 156 626 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy9g1879 626 PIRSF RR_ARR_type-B 1 158 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy9g1879 626 MobiDBLite consensus disorder prediction 141 160 - -
Lcy9g1879 626 SUPERFAMILY Homeodomain-like 157 191 IPR009057 -
Lcy9g1879 626 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Lcy9g1879 626 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 332 IPR045279 GO:0009736(InterPro)
Lcy9g1879 626 CDD REC_typeB_ARR-like 20 134 - -
Lcy9g1879 626 NCBIfam myb-like DNA-binding domain, SHAQKYF class 155 187 IPR006447 GO:0003677(InterPro)
Lcy9g1879 626 SUPERFAMILY CheY-like 17 148 IPR011006 -
Lcy9g1879 626 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Lcy9g1879 626 Gene3D - 10 129 - -
Lcy9g1879 626 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Lcy9g1879 626 Gene3D - 130 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1879 K14491 - - csv:101215220 1090.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2527 Lcy-Chr5:48076697 Lcy9g1879 Lcy-Chr9:43815993 4.81E-16 dispersed
Lcy6g0193 Lcy-Chr6:1759863 Lcy9g1879 Lcy-Chr9:43815993 3.87E-32 dispersed
Lcy9g1879 Lcy-Chr9:43815993 Lcy12g1912 Lcy-Chr12:40408497 7.27E-06 dispersed
Lcy2g0162 Lcy-Chr2:1259169 Lcy9g1879 Lcy-Chr9:43815993 3.12E-117 wgd
Lcy4g2058 Lcy-Chr4:47161794 Lcy9g1879 Lcy-Chr9:43815993 2.04E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 1 198 Response Regulator Gene Family AT1G59940 60.5 4.7e-54 209.1
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G59940 57.9 2.9e-40 163.3
Lcy1g1833 . 11 154 Response Regulator Gene Family AT1G59940 56.3 5.5e-39 159.1
Lcy7g0695 . 9 176 Response Regulator Gene Family AT1G59940 53.0 4.0e-37 152.9
Lcy10g1232 . 2 161 Response Regulator Gene Family AT1G59940 54.0 6.8e-37 152.1
Lcy7g0216 . 16 182 Response Regulator Gene Family AT1G10470 65.3 6.3e-51 198.4
Lcy5g0961 . 61 203 Response Regulator Gene Family AT1G10470 58.7 6.5e-40 161.8
Lcy1g1833 . 17 154 Response Regulator Gene Family AT1G10470 60.9 5.5e-39 158.7
Lcy10g1232 . 18 178 Response Regulator Gene Family AT1G10470 51.2 1.5e-36 150.6
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 11 172 Response Regulator Gene Family AT5G62920 62.4 9.3e-47 184.1
Lcy1g1833 . 12 156 Response Regulator Gene Family AT5G62920 57.9 2.2e-40 162.9
Lcy5g0961 . 46 205 Response Regulator Gene Family AT5G62920 52.5 1.1e-39 160.6
Lcy7g0216 . 28 182 Response Regulator Gene Family AT1G19050 59.1 4.5e-42 168.7
Lcy1g1833 . 11 156 Response Regulator Gene Family AT1G19050 54.8 6.0e-39 158.3
Lcy5g0961 . 59 205 Response Regulator Gene Family AT1G19050 53.7 3.9e-38 155.6
Lcy1g1833 . 8 268 Response Regulator Gene Family AT2G41310 52.2 8.8e-60 227.6
Lcy5g0961 . 52 207 Response Regulator Gene Family AT2G41310 75.0 9.8e-59 224.2
Lcy10g1232 . 10 160 Response Regulator Gene Family AT2G41310 59.5 1.1e-41 167.5
Lcy7g0216 . 25 155 Response Regulator Gene Family AT2G41310 57.4 1.9e-38 156.8
Lcy9g1560 . 15 163 Response Regulator Gene Family AT2G41310 51.3 1.2e-37 154.1
Lcy1g1833 . 8 268 Response Regulator Gene Family AT3G57040 53.2 1.2e-62 237.3
Lcy5g0961 . 52 209 Response Regulator Gene Family AT3G57040 78.5 4.9e-61 231.9
Lcy7g0695 . 4 168 Response Regulator Gene Family AT3G57040 61.7 4.0e-47 185.7
Lcy10g1232 . 14 190 Response Regulator Gene Family AT3G57040 54.4 4.1e-44 175.6
Lcy7g0216 . 25 155 Response Regulator Gene Family AT3G57040 58.0 2.1e-40 163.3
Lcy9g1560 . 11 163 Response Regulator Gene Family AT3G57040 54.5 3.6e-40 162.5
Lcy7g0216 . 25 184 Response Regulator Gene Family AT1G74890 60.6 1.6e-44 176.8
Lcy1g1833 . 12 149 Response Regulator Gene Family AT1G74890 59.4 1.6e-39 160.2
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G74890 55.2 1.0e-38 157.5
Lcy2g0621 . 26 169 Response Regulator Gene Family AT1G74890 58.5 1.1e-37 154.1
Lcy5g0961 . 57 205 Response Regulator Gene Family AT2G40670 55.3 9.8e-40 160.6
Lcy7g0216 . 26 156 Response Regulator Gene Family AT2G40670 54.7 3.5e-37 152.1
Lcy1g1833 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.7e-37 151.0
Lcy5g0961 . 57 205 Response Regulator Gene Family AT3G56380 54.7 2.0e-39 159.5
Lcy7g0216 . 26 156 Response Regulator Gene Family AT3G56380 54.1 6.5e-38 154.5
Lcy1g1833 . 13 156 Response Regulator Gene Family AT3G56380 53.7 3.2e-37 152.1
Lcy10g1232 . 10 157 Response Regulator Gene Family AT3G56380 54.0 9.4e-37 150.6
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy3g0037 . 154 291 Response Regulator Gene Family AT5G60100 61.6 2.9e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009381 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20695 None None None None Lcy TR