Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1879 ATGACGGTTGAGCCGAGAGTCGACGACCCAAATGACCAATTTCCGGCTGGAATGCGTGTTCTCGCCGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACAAATCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGACTGGAGATGGATCTACCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTCATGAAAGGGATTACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATCGAGGAGCTAAAAAACATTTGGCAGCATGTAATCAGGAGGAAGAAATTTGATCCAAAGGACCGGATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAGAATGAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGCGGAATTGGGAATTTCCATTCTTTGACAGGACCTCCGCAGTTCCCCAACACTGGTTATAGATCTATCCCAACTAGTGGGATGCTTGGTCGATTGAATACTCCTGCCTGTATGGGTATGCATGGCCTTTCTTCCCCAGGAACAGTTCAACTGGGTAATTTGAACAATTCAAGCAATGATCAGTCTACATTTCAGCCAATCATGCTTTCTGGAAACCGAAGTGGGAATATTTTCCGGGGAATGCCAGAGCCATCAGAACTTGATCAGCTACAACATGTTAAACATGGGACCCATGTGGACAATCTCTCTCCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTTCCAAATGCAAACATGTCTGCTGGTACTTTGAGTAATTCTCTTTTAGGATTAACGAATGATCCCTTGATTTCAGAAGTACAGCATCATGAAGTGCATGGTGGTAGAAAATTTGGACCTCAATCTTCCATTTCTGTAGTATCTTCAAACTTGGAAAGTTCACGTCCTTCACTAGATAATGTTAGATGCACTGGTGACAATTGGTCGAAAGCTGCTCATTCATCTAGGATCCACTCGAATACTATTCCGTCTAGCAACCTTTCTAATATTGCTACTTCCTACCATAGCCAGTTGAGGGACAATACTACCAGTGCATTGCATATGGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCGAGGACAGATTCTCAACGTCAAGCAGCCACAACTAGCAATAGATATGATCAAATAATCACAAAGGTTCCTCTTCAAGATTGGAATGATCATAAAGAGGATGCATATTACCACACAAATGTGGCCTGTAGCTCATCAAATTCTTTGATACCTGTGAATGGTGCTGCAGAGACATTACCCAAACATTTGGAAAATCAGAACACAATCTTCTCTGGAAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGACCATGCAATGGTGGAACATGATCAATTCAAGAAATCAGCTATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAAGCTAGATTTTCTTCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGAGGAAGATGATGGAAAGTTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATTGGAACGTGCATGTGA 1881 42.11 MTVEPRVDDPNDQFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENEAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTGYRSIPTSGMLGRLNTPACMGMHGLSSPGTVQLGNLNNSSNDQSTFQPIMLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDNLSPAFDERTVFPASIGLPNANMSAGTLSNSLLGLTNDPLISEVQHHEVHGGRKFGPQSSISVVSSNLESSRPSLDNVRCTGDNWSKAAHSSRIHSNTIPSSNLSNIATSYHSQLRDNTTSALHMGNCLSDISSITSISTQSHDSRTDSQRQAATTSNRYDQIITKVPLQDWNDHKEDAYYHTNVACSSSNSLIPVNGAAETLPKHLENQNTIFSGSKDFNVTSQANVLDHAMVEHDQFKKSAMETSLMLKQGYLYDHQQKMQARFSSSNCGSLEDIACAMMKQEEDDGKLLEGDFGCDNYPIGTCM 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43815993 43821001 + Maker00016652 Lcy9g1879 642995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1879 626 PIRSF RR_ARR_type-B 156 626 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy9g1879 626 PIRSF RR_ARR_type-B 1 158 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy9g1879 626 MobiDBLite consensus disorder prediction 141 160 - -
Lcy9g1879 626 SUPERFAMILY Homeodomain-like 157 191 IPR009057 -
Lcy9g1879 626 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Lcy9g1879 626 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 332 IPR045279 GO:0009736(InterPro)
Lcy9g1879 626 CDD REC_typeB_ARR-like 20 134 - -
Lcy9g1879 626 NCBIfam myb-like DNA-binding domain, SHAQKYF class 155 187 IPR006447 GO:0003677(InterPro)
Lcy9g1879 626 SUPERFAMILY CheY-like 17 148 IPR011006 -
Lcy9g1879 626 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Lcy9g1879 626 Gene3D - 10 129 - -
Lcy9g1879 626 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Lcy9g1879 626 Gene3D - 130 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2527 Lcy-Chr5:48076697 Lcy9g1879 Lcy-Chr9:43815993 4.81E-16 dispersed
Lcy6g0193 Lcy-Chr6:1759863 Lcy9g1879 Lcy-Chr9:43815993 3.87E-32 dispersed
Lcy9g1879 Lcy-Chr9:43815993 Lcy12g1912 Lcy-Chr12:40408497 7.27E-06 dispersed
Lcy2g0162 Lcy-Chr2:1259169 Lcy9g1879 Lcy-Chr9:43815993 3.12E-117 wgd
Lcy4g2058 Lcy-Chr4:47161794 Lcy9g1879 Lcy-Chr9:43815993 2.04E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20695 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1879 K14491 - csv:101215220 1090.1