Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1887 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGGTTGCTTGGGAAGGGGACTTTTGCGAAGGTGTATTATGGAAAGGAATTGGAGTCTGGTGAAAGTGTGGCGATTAAGGTTTTAAATAAGGATCAGGTCAAGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGTCTTGTTCGTCATCCGAACATCGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGCGGTGAGCTTTTTGCCAAGGTTGCTAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCCGTCGATTACTGTCACAGTCGTGGAGTTTCTCACCGCGATTTGAAGCCGGAGAATCTGTTGCTTGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCCTTACCGGAACAGCTTCGGAACGACGGCCTTCTCCACACGCAGTGCGGTACTCCGGCTTATGTCGCACCGGAAGTACTGAGAAGAAAGGGCTACGATGGGGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTATATGTTCTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACGATGTACAAGAAGGTTTTCAAGGCCGAGTTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTCTAATTTCAAAAATCCTGGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGTAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCCGCGAAAACAGAGGATTCCGATTCCGAGAGTCCTAAACTATCGACGCCAAAATTCTTCAACGCGTTCGAGTTGATATCGTCGATGTCGTCCGGATTCGATCTATCGAGCTTATTCGAAAACAAAAGGAAGACAGGATCCATGTTCACATCGAGATGCTCGGTGTCGACGATCATGGAGAAGATCGAGACGGTGGCGAAGAAACTGAGCTTCAAGGTATCGGAAGTGAAAGACTTCAAGCTCCGGTTGCAAGGTGCGGCGGAAGGGCGAAAAGGAAAGCTGTCAGTGACGGCGGAGGTATTCGAGATAGCGCCGGAAGTTGCCATAGTCGAATTTTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTTCGGCCAGCGCTGAAAGACATTGTTTGGACGTGGCAAGGCGATTGTGTCCCTAACGGTGACGGACGTAACGGCCAATTTGACGGTGACGGATTTTTGTGA 1332 48.5 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKTEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKKLSFKVSEVKDFKLRLQGAAEGRKGKLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDCVPNGDGRNGQFDGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43933927 43935258 + Maker00016516 Lcy9g1887 643003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1887 443 Pfam NAF domain 298 354 IPR004041 GO:0007165(InterPro)
Lcy9g1887 443 SUPERFAMILY Protein kinase-like (PK-like) 7 289 IPR011009 -
Lcy9g1887 443 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1887 443 CDD CIPK_C 302 416 - -
Lcy9g1887 443 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Lcy9g1887 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Lcy9g1887 443 FunFam Non-specific serine/threonine protein kinase 4 298 - -
Lcy9g1887 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Lcy9g1887 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Lcy9g1887 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Lcy9g1887 443 FunFam Non-specific serine/threonine protein kinase 296 420 - -
Lcy9g1887 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1887 443 CDD STKc_SnRK3 10 264 - -
Lcy9g1887 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165(InterPro)
Lcy9g1887 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1887 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy9g1887 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0577 Lcy-Chr10:15544757 Lcy9g1887 Lcy-Chr9:43933927 5.65E-75 dispersed
Lcy8g1696 Lcy-Chr8:43538302 Lcy9g1887 Lcy-Chr9:43933927 7.39E-145 dispersed
Lcy8g1697 Lcy-Chr8:43542269 Lcy9g1887 Lcy-Chr9:43933927 1.95E-170 dispersed
Lcy8g1896 Lcy-Chr8:45229147 Lcy9g1887 Lcy-Chr9:43933927 3.33E-37 dispersed
Lcy9g1887 Lcy-Chr9:43933927 Lcy9g2288 Lcy-Chr9:47301359 2.55E-40 dispersed
Lcy12g0521 Lcy-Chr12:6333534 Lcy9g1887 Lcy-Chr9:43933927 3.19E-220 wgd
Lcy2g0170 Lcy-Chr2:1345199 Lcy9g1887 Lcy-Chr9:43933927 1.04E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66223 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1887 - - - 0.0