Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1889 ATGGCCTTATTTCGCAAGTTCTTTTATCGGAAGCCACCGGACGGGCTTTTGGAGATATCCGAAAGGGTTTATGGGGTTATTAGTTCTGGAATGTCAAGTGACATTAAGATGATTGGGAAGTGGGTAAAACCAGTGAATGTATGTGCAGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGAGGATTATAAAGTCTATATTGGAGGCATTGTGGGACAACTTCGCGAGAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGGGTCAAAGCCTGATTACAAATATATTATCTGTGTATGATATGACTGTCATGGACTATCCTCGACAATATGAAGGCTGCCCTCTACTCACTATGGAGATGATCCACCACTTCTTAAGATCAAGTGAAAGCTGGCTCTCACTTGGGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCAGTCTTGGCGTTCATGTTGGCTGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGGCACCTCTTAATCCATTGCCTTCACAATTGAGGTATCTTCAATATGTGTCAAGAAGAAACGTGGCATCAGAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAAGGTGGTTGCCGACCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGCAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATTCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGATAATGATCTGGAAAGGGAGGAGATGGTGTTTCGAGTTATGTTTAATACGGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATCCTATGGCACGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTAACGCATCACTTATTTCAATTGAATTGCCAAATATTGAGGAAAAAGATGGTCTTCCGATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCGAATTTACTTCAAGAGAAACTGGTTAGTTCCGGTTCTTTAGAGAAAAACCAGTTGCTTGACTTATCTTTTGAAAAACTAATCTCGGAATCAGAGACATCTGAAGACAACATTGGAAGTCCCCCATTGGAGATACAAACAAATCAATCTCAGACTTCTTCCGAACTATCTCGTGCTGCAAGTTCAGTGAGATCAGAGGTTGAACCCCCAGAATTACAGGTTGCTCTCCAACTACCCCCTCAGACTAAAATCATTACCCAACGAATACCCCAACCTTCCTTGTCTACACCAGTTTCCTTCCGTAGTTCTGTGCAAGGTTCACCTCGCCCAATATTAAGATATCATAGTGCACCCTCAGCCCTTGGCATTACGGCTTTATTACACGATCATTCCAAATCAAGTAGTAAAGAAGTCATACATCCAGTGACAATATCTTCACCATCATCTGCTCGCTTGACTAGAAGTGTTCCAGATTCACCTAAATATAGTCAACCCAGTAACCTTCCTATTTTGCCTCTCTCGCTGCCATTAGAGCCAAGTTCTACATTAGAAAATTCTTCTACCAACAAGTCAACTTCAACCATTCCTGATCCGTTGTCACTTCACCAACTTTCTTTGAAACCTATTAAATCTTCGATTTCTCAACTGTCTCAAACCACACCACGGGGGAGAAGTCAATTATCACCAGCTTCATTACAGCCAACACCCACCTTTGTTCCTGGGAAGTCCCCACCCTCTTTCAACGAGAGCTTACCTTCAATAGCCTCTTCTTCTCCTTTATTAAGATCATCCCCATCTTCCTGTACTAAGGAATCACTTTCCATTCCCACTCCTCCCCTCTCTCATCTTGATTCACCTTCATTTGTAGTAACATCTTCATCTTGTAGTAGGACGAACGGTTCAATTTCCCCATCTCCACCACAACCTTCGTCTACAACACTACTATTATCCTCTACAAAGACATCAATTCCAATTGTTCCTCAATCTTCTTTGTCCAATGATCATCTAGTTTCTTCTCAGTCACCTAAAAAGAACTTGAAGATTATCCCACCCCCACCCCCTCCCCCTCCTCCATCATGTTCTAGCCCTAACTTGGGCACTAGTGTTGTCTCGCCAACATCGGTGCCCCCACCCCCACCTCCACCTCCTTCATGGAAGGACTCTATAATCACTGTCATGCATGATCCCCCACCTCCACCTCCAGCCCCACCCTTGCCCCCATCTTCTTTGAGTCCAACATCTACTTGTGGTTCTGGTTTCACGTCTTTAGGGCCACCACCACCGCCACCACCTCCTCCTAGTCTGTCACCACAGGATTCTACCACGGTAATTAGGAACTTGACGGTTGAACCTGGCCCTCCGCCTCCCCCACCTCCACCCCCTCTTAATTCTTCCTTAGGTCCTAGTATAGTGCCGCCACCGCCACCACCCCCTTCTAATCTTGCACCAAATGTTTCTGCAACAACGCATGTCTCTGGCCCCCCTCCTCCTCCTCCTCCACCTTTTGCAAATTCCGAATCCACCTTATGTCCAGGTGTTGTAACATCAGCTCCACCTGCTCCACCTCCTCCAGGTTTTTCAATGAATGGTTCTGCAACACATACTCCACCTGCACCCCCTCCTCCAGGTCTCTGCGGTAATACACTTTCAAATGTCAATGGTACTTCCTCACAGTCTCAAGTTGGTATTAATAACAGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGCTCTATTCAATGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCTTACCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCGGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCTGGAGGTTCTGGTGGAAGTTCAAATCGCCGAGCCTCAGGGCCGAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGACTTGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCGACGAAGGAAGAAATGGAATTACTTAAGGGTTACAGTGGGGATAAGGACAACTTGGGAAAATGCGAACAATTCTTCTGGGAATTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGTTCGCAGATCAGAGGTTCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCGTTGGGTAATGCTTTGAACCACGGAACGGCTAGAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTTTAGATTTTCCAAAGGACCTTGTGAGTTTGGAAGGTTCTACGAAGATACAACTTAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAAAACGATGGGCCCATTTCCGAAATTTTTTGCGGGACTTTAAAAGGCTTCCTTTCTCACGCTGAGGCGGAAGTGCGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCACTGGCTCTTTATTTCGGCGAGGATCCAGCACGCTGCCCTTTTGAGCAAGTTGTCTCTACACTGTTCAATTTCGTGCGGATGTTCGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTTGAATATGAAAAAAAGAAAGCACAGAAGGAAGCAGCAGAAAAGGAGAAGTTGAAGGTCAATACCCCAAATAAGGAGTCGGGATTCTTGATGCAGACTCCAACCTAG 4242 44.18 MALFRKFFYRKPPDGLLEISERVYGVISSGMSSDIKMIGKWVKPVNVCAVFDCCFTTEVLEEEDYKVYIGGIVGQLRESLTDASFMVFNFREGEGQSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMAPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMVFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDANASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLEKNQLLDLSFEKLISESETSEDNIGSPPLEIQTNQSQTSSELSRAASSVRSEVEPPELQVALQLPPQTKIITQRIPQPSLSTPVSFRSSVQGSPRPILRYHSAPSALGITALLHDHSKSSSKEVIHPVTISSPSSARLTRSVPDSPKYSQPSNLPILPLSLPLEPSSTLENSSTNKSTSTIPDPLSLHQLSLKPIKSSISQLSQTTPRGRSQLSPASLQPTPTFVPGKSPPSFNESLPSIASSSPLLRSSPSSCTKESLSIPTPPLSHLDSPSFVVTSSSCSRTNGSISPSPPQPSSTTLLLSSTKTSIPIVPQSSLSNDHLVSSQSPKKNLKIIPPPPPPPPPSCSSPNLGTSVVSPTSVPPPPPPPPSWKDSIITVMHDPPPPPPAPPLPPSSLSPTSTCGSGFTSLGPPPPPPPPPSLSPQDSTTVIRNLTVEPGPPPPPPPPPLNSSLGPSIVPPPPPPPSNLAPNVSATTHVSGPPPPPPPPFANSESTLCPGVVTSAPPAPPPPGFSMNGSATHTPPAPPPPGLCGNTLSNVNGTSSQSQVGINNSNIPSIPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGSSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDLALDVDQVENLIKFCPTKEEMELLKGYSGDKDNLGKCEQFFWELMKVPRVESKLRVFSFKIQFRSQIRGSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEGSTKIQLKYLAEEMQAISKGLEKVVQELANSENDGPISEIFCGTLKGFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLEYEKKKAQKEAAEKEKLKVNTPNKESGFLMQTPT 1413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43958041 43967993 - Maker00016935 Lcy9g1889 643005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1889 1413 ProSiteProfiles C2 tensin-type domain profile. 224 363 IPR014020 -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 763 779 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 1390 1413 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 554 587 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 549 616 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 595 616 - -
Lcy9g1889 1413 Gene3D Protein tyrosine phosphatase superfamily 20 216 IPR029021 -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 907 922 - -
Lcy9g1889 1413 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 212 IPR029021 -
Lcy9g1889 1413 SUPERFAMILY Formin homology 2 domain (FH2 domain) 936 1388 - -
Lcy9g1889 1413 Gene3D - 221 366 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 450 478 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 789 803 - -
Lcy9g1889 1413 SMART it6_source 582 1410 IPR015425 -
Lcy9g1889 1413 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1010 1394 IPR015425 -
Lcy9g1889 1413 SMART PTEN_C2_2 222 362 IPR014020 -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 1064 1082 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 630 762 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 963 991 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 450 482 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 630 1022 - -
Lcy9g1889 1413 Pfam C2 domain of PTEN tumour-suppressor protein 224 362 IPR014020 -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 839 854 - -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 1005 1019 - -
Lcy9g1889 1413 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 226 363 IPR035892 -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 1064 1086 - -
Lcy9g1889 1413 Gene3D Formin, FH2 domain 1029 1405 IPR042201 -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 810 827 - -
Lcy9g1889 1413 Pfam Formin Homology 2 Domain 1189 1368 IPR015425 -
Lcy9g1889 1413 Pfam Formin Homology 2 Domain 1012 1191 IPR015425 -
Lcy9g1889 1413 PANTHER FORMIN-J 1 1394 IPR051144 -
Lcy9g1889 1413 MobiDBLite consensus disorder prediction 866 899 - -
Lcy9g1889 1413 Coils Coil 1369 1396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0552 Lcy-Chr2:4730283 Lcy9g1889 Lcy-Chr9:43958041 7.38E-275 dispersed
Lcy5g2518 Lcy-Chr5:47956296 Lcy9g1889 Lcy-Chr9:43958041 7.48E-290 dispersed
Lcy9g0003 Lcy-Chr9:97149 Lcy9g1889 Lcy-Chr9:43958041 2.31E-36 dispersed
Lcy9g1889 Lcy-Chr9:43958041 Lcy13g1039 Lcy-Chr13:22711472 5.41E-14 dispersed
Lcy12g1998 Lcy-Chr12:41352171 Lcy9g1889 Lcy-Chr9:43958041 5.56E-283 transposed
Lcy2g0173 Lcy-Chr2:1380744 Lcy9g1889 Lcy-Chr9:43958041 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1889 K28090 - csv:101214019 2014.58