Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1889 | ATGGCCTTATTTCGCAAGTTCTTTTATCGGAAGCCACCGGACGGGCTTTTGGAGATATCCGAAAGGGTTTATGGGGTTATTAGTTCTGGAATGTCAAGTGACATTAAGATGATTGGGAAGTGGGTAAAACCAGTGAATGTATGTGCAGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGAGGATTATAAAGTCTATATTGGAGGCATTGTGGGACAACTTCGCGAGAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGGGTCAAAGCCTGATTACAAATATATTATCTGTGTATGATATGACTGTCATGGACTATCCTCGACAATATGAAGGCTGCCCTCTACTCACTATGGAGATGATCCACCACTTCTTAAGATCAAGTGAAAGCTGGCTCTCACTTGGGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCAGTCTTGGCGTTCATGTTGGCTGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGGCACCTCTTAATCCATTGCCTTCACAATTGAGGTATCTTCAATATGTGTCAAGAAGAAACGTGGCATCAGAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAAGGTGGTTGCCGACCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGCAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATTCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGATAATGATCTGGAAAGGGAGGAGATGGTGTTTCGAGTTATGTTTAATACGGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATCCTATGGCACGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTAACGCATCACTTATTTCAATTGAATTGCCAAATATTGAGGAAAAAGATGGTCTTCCGATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCGAATTTACTTCAAGAGAAACTGGTTAGTTCCGGTTCTTTAGAGAAAAACCAGTTGCTTGACTTATCTTTTGAAAAACTAATCTCGGAATCAGAGACATCTGAAGACAACATTGGAAGTCCCCCATTGGAGATACAAACAAATCAATCTCAGACTTCTTCCGAACTATCTCGTGCTGCAAGTTCAGTGAGATCAGAGGTTGAACCCCCAGAATTACAGGTTGCTCTCCAACTACCCCCTCAGACTAAAATCATTACCCAACGAATACCCCAACCTTCCTTGTCTACACCAGTTTCCTTCCGTAGTTCTGTGCAAGGTTCACCTCGCCCAATATTAAGATATCATAGTGCACCCTCAGCCCTTGGCATTACGGCTTTATTACACGATCATTCCAAATCAAGTAGTAAAGAAGTCATACATCCAGTGACAATATCTTCACCATCATCTGCTCGCTTGACTAGAAGTGTTCCAGATTCACCTAAATATAGTCAACCCAGTAACCTTCCTATTTTGCCTCTCTCGCTGCCATTAGAGCCAAGTTCTACATTAGAAAATTCTTCTACCAACAAGTCAACTTCAACCATTCCTGATCCGTTGTCACTTCACCAACTTTCTTTGAAACCTATTAAATCTTCGATTTCTCAACTGTCTCAAACCACACCACGGGGGAGAAGTCAATTATCACCAGCTTCATTACAGCCAACACCCACCTTTGTTCCTGGGAAGTCCCCACCCTCTTTCAACGAGAGCTTACCTTCAATAGCCTCTTCTTCTCCTTTATTAAGATCATCCCCATCTTCCTGTACTAAGGAATCACTTTCCATTCCCACTCCTCCCCTCTCTCATCTTGATTCACCTTCATTTGTAGTAACATCTTCATCTTGTAGTAGGACGAACGGTTCAATTTCCCCATCTCCACCACAACCTTCGTCTACAACACTACTATTATCCTCTACAAAGACATCAATTCCAATTGTTCCTCAATCTTCTTTGTCCAATGATCATCTAGTTTCTTCTCAGTCACCTAAAAAGAACTTGAAGATTATCCCACCCCCACCCCCTCCCCCTCCTCCATCATGTTCTAGCCCTAACTTGGGCACTAGTGTTGTCTCGCCAACATCGGTGCCCCCACCCCCACCTCCACCTCCTTCATGGAAGGACTCTATAATCACTGTCATGCATGATCCCCCACCTCCACCTCCAGCCCCACCCTTGCCCCCATCTTCTTTGAGTCCAACATCTACTTGTGGTTCTGGTTTCACGTCTTTAGGGCCACCACCACCGCCACCACCTCCTCCTAGTCTGTCACCACAGGATTCTACCACGGTAATTAGGAACTTGACGGTTGAACCTGGCCCTCCGCCTCCCCCACCTCCACCCCCTCTTAATTCTTCCTTAGGTCCTAGTATAGTGCCGCCACCGCCACCACCCCCTTCTAATCTTGCACCAAATGTTTCTGCAACAACGCATGTCTCTGGCCCCCCTCCTCCTCCTCCTCCACCTTTTGCAAATTCCGAATCCACCTTATGTCCAGGTGTTGTAACATCAGCTCCACCTGCTCCACCTCCTCCAGGTTTTTCAATGAATGGTTCTGCAACACATACTCCACCTGCACCCCCTCCTCCAGGTCTCTGCGGTAATACACTTTCAAATGTCAATGGTACTTCCTCACAGTCTCAAGTTGGTATTAATAACAGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGCTCTATTCAATGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCTTACCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCGGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCTGGAGGTTCTGGTGGAAGTTCAAATCGCCGAGCCTCAGGGCCGAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGACTTGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCGACGAAGGAAGAAATGGAATTACTTAAGGGTTACAGTGGGGATAAGGACAACTTGGGAAAATGCGAACAATTCTTCTGGGAATTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGTTCGCAGATCAGAGGTTCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCGTTGGGTAATGCTTTGAACCACGGAACGGCTAGAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTTTAGATTTTCCAAAGGACCTTGTGAGTTTGGAAGGTTCTACGAAGATACAACTTAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAAAACGATGGGCCCATTTCCGAAATTTTTTGCGGGACTTTAAAAGGCTTCCTTTCTCACGCTGAGGCGGAAGTGCGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCACTGGCTCTTTATTTCGGCGAGGATCCAGCACGCTGCCCTTTTGAGCAAGTTGTCTCTACACTGTTCAATTTCGTGCGGATGTTCGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTTGAATATGAAAAAAAGAAAGCACAGAAGGAAGCAGCAGAAAAGGAGAAGTTGAAGGTCAATACCCCAAATAAGGAGTCGGGATTCTTGATGCAGACTCCAACCTAG | 4242 | 44.18 | MALFRKFFYRKPPDGLLEISERVYGVISSGMSSDIKMIGKWVKPVNVCAVFDCCFTTEVLEEEDYKVYIGGIVGQLRESLTDASFMVFNFREGEGQSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMAPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMVFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDANASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLEKNQLLDLSFEKLISESETSEDNIGSPPLEIQTNQSQTSSELSRAASSVRSEVEPPELQVALQLPPQTKIITQRIPQPSLSTPVSFRSSVQGSPRPILRYHSAPSALGITALLHDHSKSSSKEVIHPVTISSPSSARLTRSVPDSPKYSQPSNLPILPLSLPLEPSSTLENSSTNKSTSTIPDPLSLHQLSLKPIKSSISQLSQTTPRGRSQLSPASLQPTPTFVPGKSPPSFNESLPSIASSSPLLRSSPSSCTKESLSIPTPPLSHLDSPSFVVTSSSCSRTNGSISPSPPQPSSTTLLLSSTKTSIPIVPQSSLSNDHLVSSQSPKKNLKIIPPPPPPPPPSCSSPNLGTSVVSPTSVPPPPPPPPSWKDSIITVMHDPPPPPPAPPLPPSSLSPTSTCGSGFTSLGPPPPPPPPPSLSPQDSTTVIRNLTVEPGPPPPPPPPPLNSSLGPSIVPPPPPPPSNLAPNVSATTHVSGPPPPPPPPFANSESTLCPGVVTSAPPAPPPPGFSMNGSATHTPPAPPPPGLCGNTLSNVNGTSSQSQVGINNSNIPSIPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGSSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDLALDVDQVENLIKFCPTKEEMELLKGYSGDKDNLGKCEQFFWELMKVPRVESKLRVFSFKIQFRSQIRGSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEGSTKIQLKYLAEEMQAISKGLEKVVQELANSENDGPISEIFCGTLKGFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLEYEKKKAQKEAAEKEKLKVNTPNKESGFLMQTPT | 1413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 43958041 | 43967993 | - | Maker00016935 | Lcy9g1889 | 643005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1889 | 1413 | ProSiteProfiles | C2 tensin-type domain profile. | 224 | 363 | IPR014020 | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 763 | 779 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 1390 | 1413 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 554 | 587 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 549 | 616 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 595 | 616 | - | - | |
Lcy9g1889 | 1413 | Gene3D | Protein tyrosine phosphatase superfamily | 20 | 216 | IPR029021 | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 907 | 922 | - | - | |
Lcy9g1889 | 1413 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 93 | 212 | IPR029021 | - | |
Lcy9g1889 | 1413 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 936 | 1388 | - | - | |
Lcy9g1889 | 1413 | Gene3D | - | 221 | 366 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 450 | 478 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 789 | 803 | - | - | |
Lcy9g1889 | 1413 | SMART | it6_source | 582 | 1410 | IPR015425 | - | |
Lcy9g1889 | 1413 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 1010 | 1394 | IPR015425 | - | |
Lcy9g1889 | 1413 | SMART | PTEN_C2_2 | 222 | 362 | IPR014020 | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 1064 | 1082 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 630 | 762 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 963 | 991 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 450 | 482 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 630 | 1022 | - | - | |
Lcy9g1889 | 1413 | Pfam | C2 domain of PTEN tumour-suppressor protein | 224 | 362 | IPR014020 | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 839 | 854 | - | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 1005 | 1019 | - | - | |
Lcy9g1889 | 1413 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 226 | 363 | IPR035892 | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 1064 | 1086 | - | - | |
Lcy9g1889 | 1413 | Gene3D | Formin, FH2 domain | 1029 | 1405 | IPR042201 | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 810 | 827 | - | - | |
Lcy9g1889 | 1413 | Pfam | Formin Homology 2 Domain | 1189 | 1368 | IPR015425 | - | |
Lcy9g1889 | 1413 | Pfam | Formin Homology 2 Domain | 1012 | 1191 | IPR015425 | - | |
Lcy9g1889 | 1413 | PANTHER | FORMIN-J | 1 | 1394 | IPR051144 | - | |
Lcy9g1889 | 1413 | MobiDBLite | consensus disorder prediction | 866 | 899 | - | - | |
Lcy9g1889 | 1413 | Coils | Coil | 1369 | 1396 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0552 | Lcy-Chr2:4730283 | Lcy9g1889 | Lcy-Chr9:43958041 | 7.38E-275 | dispersed | |
Lcy5g2518 | Lcy-Chr5:47956296 | Lcy9g1889 | Lcy-Chr9:43958041 | 7.48E-290 | dispersed | |
Lcy9g0003 | Lcy-Chr9:97149 | Lcy9g1889 | Lcy-Chr9:43958041 | 2.31E-36 | dispersed | |
Lcy9g1889 | Lcy-Chr9:43958041 | Lcy13g1039 | Lcy-Chr13:22711472 | 5.41E-14 | dispersed | |
Lcy12g1998 | Lcy-Chr12:41352171 | Lcy9g1889 | Lcy-Chr9:43958041 | 5.56E-283 | transposed | |
Lcy2g0173 | Lcy-Chr2:1380744 | Lcy9g1889 | Lcy-Chr9:43958041 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1889 | K28090 | - | csv:101214019 | 2014.58 |