Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1891 ACACAGAAGAAGAAGAAGAAGAAGAAGCCCGGAAGCTGTAGAAGAAAGAAATCTTCAGCCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTTGTGGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCTCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAACCTGCTCACTCAGGTAAACACATATATTAGGGCTAGTAAGATTCTCCATGCACTTGACATAGTTGTGTTGTGTACTTAG 504 45.83 TQKKKKKKKPGSCRRKKSSAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQVNTYIRASKILHALDIVVLCT 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43982955 43985135 + Maker00016923 Lcy9g1891 643007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1891 167 Gene3D - 106 165 IPR012340 -
Lcy9g1891 167 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 21 154 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lcy9g1891 167 PIRSF Transl_init_eIF5A 21 165 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lcy9g1891 167 MobiDBLite consensus disorder prediction 16 33 - -
Lcy9g1891 167 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 105 149 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy9g1891 167 SMART eIF_5a_2 105 163 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy9g1891 167 FunFam Eukaryotic translation initiation factor 5A 106 165 - -
Lcy9g1891 167 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 70 77 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy9g1891 167 Pfam Translation initiation factor 5A-like, N-terminal 37 99 IPR048670 -
Lcy9g1891 167 MobiDBLite consensus disorder prediction 1 42 - -
Lcy9g1891 167 MobiDBLite consensus disorder prediction 1 15 - -
Lcy9g1891 167 NCBIfam translation initiation factor IF-5A 37 143 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lcy9g1891 167 FunFam Eukaryotic translation initiation factor 5A 21 105 - -
Lcy9g1891 167 SUPERFAMILY Translation proteins SH3-like domain 35 113 IPR008991 -
Lcy9g1891 167 Gene3D - 21 105 IPR014722 -
Lcy9g1891 167 SUPERFAMILY Nucleic acid-binding proteins 106 155 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0315 Lcy-Chr7:2691353 Lcy9g1891 Lcy-Chr9:43982955 1.11E-79 dispersed
Lcy13g1832 Lcy-Chr13:37302986 Lcy9g1891 Lcy-Chr9:43982955 8.13E-77 wgd
Lcy2g0177 Lcy-Chr2:1423151 Lcy9g1891 Lcy-Chr9:43982955 1.93E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1891 K03263 - mdm:103423800 260.381