Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1902 ATGAGAAAGGCATTGAACTGTCAGGATTACTGGATTGAAATGGGTATTTACCTCAGCAATCCGAAAACTGAGAAGTCCTCTGAAGATGGTGAGAATAGACGGCTTAGATATGGACTATCATCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAATTCCTGATCTGGATGCTTGCACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTATCTACATCAGCAAGTGAAGAAAAATGAAGCTTATGCAGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATACTTAAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCTGTTTTGGGTGATAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCACCAAGAAGCAGTGATGCAAATGACCAGTCTGATGATTGGGCTTTTGAGGAGGGTCCGCACTCTGATTTTTCTGGCCCAACTTCGGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTTGTTGTTGCAAATGCTGGTGATTCTCGTTGTGTGATATCAAGAAAGGGCCAGGCTCACAGTCTCTCTAGAGATCACAAGCCTGATCTTGAGGCTGAGAGGGACAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAAGCAAATAATCACTGCAAATCCTGATGTAACCACTGTTGAGCTTTGTGACGATGACGAGTTTATTGTGATAGCGTGTGATGGGATATGGGATTGCATGTCTAACCAGCATCTGGTAGATTTTATACATGAACAGCTAAAAACAGAAAGTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACAGCTGGTGGTGAGGGCTGTGATAACATGACCATGATTTTGGTGCAGCTAAAGAAAGATATCCAATCAAACTCCTCCATTGATGAGCAAGCCTCACCCTCTACCACCGCGACCGAACCAGACAGTACCGAATCAAACTAG 1116 43.37 MRKALNCQDYWIEMGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAIPDLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNEAYAAGDIGTSVQKAYLRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPRSSDANDQSDDWAFEEGPHSDFSGPTSGCTACVAIIRNNKLVVANAGDSRCVISRKGQAHSLSRDHKPDLEAERDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQHLVDFIHEQLKTESKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQLKKDIQSNSSIDEQASPSTTATEPDSTESN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44049366 44056704 - Maker00016291 Lcy9g1902 643018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1902 371 Gene3D - 13 343 IPR036457 -
Lcy9g1902 371 SMART PP2C_4 26 340 IPR001932 -
Lcy9g1902 371 ProSiteProfiles PPM-type phosphatase domain profile. 36 342 IPR001932 -
Lcy9g1902 371 PANTHER PROTEIN PHOSPHATASE 2C 31 343 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy9g1902 371 CDD PP2Cc 36 342 IPR001932 -
Lcy9g1902 371 MobiDBLite consensus disorder prediction 349 371 - -
Lcy9g1902 371 Pfam Protein phosphatase 2C 149 326 IPR001932 -
Lcy9g1902 371 Pfam Protein phosphatase 2C 36 117 IPR001932 -
Lcy9g1902 371 SUPERFAMILY PP2C-like 16 343 IPR036457 -
Lcy9g1902 371 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1989 Lcy-Chr3:47041257 Lcy9g1902 Lcy-Chr9:44049366 4.13E-207 dispersed
Lcy9g1902 Lcy-Chr9:44049366 Lcy9g2338 Lcy-Chr9:47748218 1.98E-33 dispersed
Lcy9g1902 Lcy-Chr9:44049366 Lcy12g0891 Lcy-Chr12:12724307 3.60E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1902 K17499 - csv:101211604 662.529