Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1913 ATGGCACAGGCCGGCGGGCCGTCCGTCGAAGTCCCAACCGGCCGGCGAGACGGAAGGATATCGGCGGCCACAAACGTCCGACCAAACATCGTCGACACAAGCTTTTCAGTCAACCAAATGATGAGCCTCTTCTCATCAAAAGGACTGTCGGCGGACGACCTCGTCATTCTCTCTGGGGCCCACACAATCGGAGCGGCCCACTGCAACGCCTTCAGCGACCGCTTCAGAAGAGGCCCAAACGGCCAACTGACCCTCGTCGACTCCTCTCTCGACGGCGCTTACGCCAACGAGCTCATGCGGCGGTGCCCGGCCGGCGCCGCCCCCGCTGTCACCGTGGAAAACGATCCGGCGACGGCGTTTGTGTTCGACAATCAGTACTACAAAAACATTCTGTCGCACAAAGGGCTGTTTCAGTCGGATTCCGTTCTGATAAGCGACCGCCGGACCAGGGCCCAAGTGGAGAGCTTTGCGAAGGATCAGATTGGGTTTTTTGAAAATTGGGCTCAGTCGTTCTTGAAACTTAGCAGTATTGGAGTTAAAAGTGGGGAAGAAGGGGAAATTAGATTGTCTTGTTCTACTAATAATGTTTGA 591 55.67 MAQAGGPSVEVPTGRRDGRISAATNVRPNIVDTSFSVNQMMSLFSSKGLSADDLVILSGAHTIGAAHCNAFSDRFRRGPNGQLTLVDSSLDGAYANELMRRCPAGAAPAVTVENDPATAFVFDNQYYKNILSHKGLFQSDSVLISDRRTRAQVESFAKDQIGFFENWAQSFLKLSSIGVKSGEEGEIRLSCSTNNV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44127211 44127801 + Maker00016775 Lcy9g1913 643029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1913 196 Pfam Peroxidase 2 159 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 PRINTS Haem peroxidase superfamily signature 115 130 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 PRINTS Haem peroxidase superfamily signature 53 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 PRINTS Haem peroxidase superfamily signature 5 17 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 ProSiteProfiles Plant heme peroxidase family profile. 1 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 ProSitePatterns Peroxidases proximal heme-ligand signature. 53 63 IPR019793 -
Lcy9g1913 196 SUPERFAMILY Heme-dependent peroxidases 3 195 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 Gene3D - 3 195 - -
Lcy9g1913 196 PANTHER - 2 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 FunFam Peroxidase 31 174 - -
Lcy9g1913 196 MobiDBLite consensus disorder prediction 1 23 - -
Lcy9g1913 196 Gene3D Peroxidase, domain 2 31 174 - -
Lcy9g1913 196 PRINTS Plant peroxidase signature 129 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 PRINTS Plant peroxidase signature 113 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 PRINTS Plant peroxidase signature 5 20 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 PRINTS Plant peroxidase signature 169 182 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy9g1913 196 PRINTS Plant peroxidase signature 52 64 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1913 Lcy-Chr9:44127211 Lcy10g2284 Lcy-Chr10:46501782 8.37E-47 dispersed
Lcy9g1913 Lcy-Chr9:44127211 Lcy10g1952 Lcy-Chr10:43564455 1.44E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1913 K00430 - csv:101211842 337.035