Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1917 ATGAACGGCCACGGCCACTCCAATCGCTGTTCGAAAACTCGCACGGTCGCATTGACTCAGTCCTACCGTTTTAGTTCAACTTGGGCGGCTCCACGGTCATGCGAGGAACGGCTTATTCCTTTCGCATCTGTAACAATAGCTACTAGATATTTTTTGTTTGTTTGCCTTTTTGTTTGTTCCATTTTGATCGAAGAGATTGGAGCTGGACATTTTCAGAGCCTAGACAATATGGGCTATCTGAATTCGGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGGGGATTAAGCCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCAGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACGCGAATAGATGGCGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTATTCGATGGTCATGGTGGAGCACGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCAGGCATCCAAAGTTTATATCAGATACCAAATCCGCTATATCTGATGCATACAACCATACAGACACAGAATTTCTGAAGTCTGAAAATAACCAAAACAGGGATGCTGGATCAACTGCTTCCACTGCCATTCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCCGGGGTGGTACCGCCATTGCTGTCTCTCGGGATCATAAGCCTGACCAAACTGATGAGCGGCGACGAATTGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGCGTTCTTGCTGTTTCACGGGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTAGCTGACCCTGAAATTCAGGATCCCTGTTTTAAACTTCATGATTTAACTTCCAGGAGGAAAAGATTGATAGCTCGCTCGAGTTTCTTATACTTGCAAGTGATGGACTGTGGGATGTCGTCTCTAATGAGTTTACCAAATGTTCAATGCCTTGTTCAGGAAGCTGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCGGCAAAGAGGTTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGCGTCGTCGTCCGTTTCTTGGCAAATCAAGGAAGTCCCTCTCGTGGGACTTCTGGTAATGTTGGGTTCGTAGTCATAGGAAATTCCAGTAACATTGTTGATTGTACTTATAAAAAGGATAGACATAACGAGAAGTTATCAGCCCTTTCTAAGGGAGAAATTCTAGGTGCTTCCAGTGCAATGAGGTAG 1302 44.93 MNGHGHSNRCSKTRTVALTQSYRFSSTWAAPRSCEERLIPFASVTIATRYFLFVCLFVCSILIEEIGAGHFQSLDNMGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAISDAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQDPCFKLHDLTSRRKRLIARSSFLYLQVMDCGMSSLMSLPNVQCLVQEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSRGTSGNVGFVVIGNSSNIVDCTYKKDRHNEKLSALSKGEILGASSAMR 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44161374 44166631 + Maker00016974 Lcy9g1917 643033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1917 433 FunFam probable protein phosphatase 2C 59 102 381 - -
Lcy9g1917 433 ProSiteProfiles PPM-type phosphatase domain profile. 110 377 IPR001932 -
Lcy9g1917 433 PANTHER PROTEIN PHOSPHATASE 97 376 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy9g1917 433 Gene3D - 102 382 IPR036457 -
Lcy9g1917 433 CDD PP2Cc 109 377 IPR001932 -
Lcy9g1917 433 Pfam Protein phosphatase 2C 139 370 IPR001932 -
Lcy9g1917 433 SUPERFAMILY PP2C-like 104 377 IPR036457 -
Lcy9g1917 433 ProSitePatterns PPM-type phosphatase domain signature. 141 149 IPR000222 GO:0043169(InterPro)
Lcy9g1917 433 SMART PP2C_4 100 375 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1302 Lcy-Chr10:35901246 Lcy9g1917 Lcy-Chr9:44161374 1.62E-98 dispersed
Lcy6g0090 Lcy-Chr6:846158 Lcy9g1917 Lcy-Chr9:44161374 3.73E-97 dispersed
Lcy9g1733 Lcy-Chr9:42519459 Lcy9g1917 Lcy-Chr9:44161374 6.80E-32 dispersed
Lcy9g1917 Lcy-Chr9:44161374 Lcy9g1989 Lcy-Chr9:44765427 5.39E-11 dispersed
Lcy9g1917 Lcy-Chr9:44161374 Lcy4g0673 Lcy-Chr4:8138087 2.29E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1917 K17506 - csv:101216117 517.694