Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1919 TTAGTCGTGCGTCCTGCAGTTCTATCCTCTTCGTTCGTAAATGTGGCTTCCATCTACGTTTTGACTCGCTTTTTTGCAAATTACTCTGGCTTCATTGTTCTGCATCTGATCATGAATCTGAATTCGAGTTCGGAGTCATCTTTTCACCTCTCTTCTCGGTCGTTTCACATTCGGAGATTTCGTTATGAATTTGGAAGAGTTCCTTCACTATCTTCGGATTTCGCCGTTCTAACATGCATTTCTGAGCATCATCAGCTTTCGCTGATAATTGCCATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGATATCGAAGCCCTTCCTTCTATGTGGCCCGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTTGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACACTATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAAGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCACGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTTGAAATTGATGCTGAGTATGATACAGTGACATACTGGAAGCAGCGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTATACAGCGAGAGCAGATGCTTGCAGAGAAGCTTCACGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTATGGAGAAAGGGTTGCCAGCAAAGAGGGAAATACAATTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATCAATTATATGGGAATGGACATAACTGACCAGGTTAAAAAACGAGAAAAAATGGCAAAACTTCGTGAGGAGATAGCAGTGCAAAAAGCAAAGGAATCAGAGCTGAACAAAACAATTCATATTACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCCTGTCCACCACGAAACTTGATCGGGAACAGCGACATTTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACTTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGACAAATCCTCACCAACTTGATCAGCAACGCAATTAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCACTGGGAAAGGAGAAGAATGCCATAAGAAATCAACGGCCGATAATGCAACGCTTCCAGCAAATGGTTTGCAAGAAGGAACATGTCCTCCAGCCCCTCAGAATGGCTCGTGTGGCCAAAAACACGGTGACAGAAATAATTTGCATTGTGATGCTCCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAATAGAGAAAACAAATCCTGTTCACCTGAAACAACGGTATGGATACGCTGTGATGTATACGACACAGGAATTGGAATACCAGAAAATGCATTACCAAACCTTTTTAGGAAGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGTCTCGGGCTGGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTGACCGTTACCAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCGTACAAGGTTTCAACCACCTGCAGTCATTCCGACGATTCCGATGAGCTCTCAGATGACGAGTCCACAAATGACGAAATGACCGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTTCACTGTCATCTTCTAATGGATCCACAAGGATCTCAAACTCATTATTACATACAACTGGATATCCCAGCTCAACCAAACTCAATGGCTTTGCTGAAGTTTCTTATCCTGTTCCCTCAAACAACATCACACCACAAGAGACTGCTTCTCTTAGAGATGATCGTTGCTCCACTGCTGCAGTAACCTCAAGCGAATTACAATGTTCATCAAGTCATATCAACTCAAATCTCGATAATGAGAAATCAACTCATGGAGCAAACCGAAATCAACCCGACACAAATGCTCGGTTCCAAAATGTCGGTGTGAATTCCCTTCACAGATCAGAAACAACAAAGCAAGAAGATACATTGGAAAAGCCAAGTAATAAACTTCAAAAAACTGATCAGGGGAAAGAGAGATCCGATGCAAGTTCCCATAGCAGAACTAGCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGGATTCTTCTTGTTGAGGATAACAAGACCAATATCATGGTGACTCAGTCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTGGTAACCAATGGAATTGAAGCTGTTCGTGCAGTTCAACGGCGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAACTGGGAGGCAGCTGTAAATGCTGGAGTCGAGCCAACTACACCTTGTTGGACTCCTTCCTCCTCCCGCAAAAGGATGCCCATCATTGCTGTGAGTATCACTTCCCTATTTTTATTTATTAGCCCCAGGAGTCTGGATAGATTTATCTTTAATAGAGGACTAAACATTAGGATGACGGCGAATGCATTGTCAGAGAGCGCAGACGAGTGTTACGAAAACGGCATGGACTCGTTCGTATCGAAGCCAATCACCATCCAAAAGTTAAAAGAATGTCTTGAACAATATTTACCACAACGTCCCTTGTAA 3381 41.73 LVVRPAVLSSSFVNVASIYVLTRFFANYSGFIVLHLIMNLNSSSESSFHLSSRSFHIRRFRYEFGRVPSLSSDFAVLTCISEHHQLSLIIAMVCEMETDVIEDMDIEALPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLHYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASIQREQMLAEKLHENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVMEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPTGKGEECHKKSTADNATLPANGLQEGTCPPAPQNGSCGQKHGDRNNLHCDAPGTPSKSETTMNGNRENKSCSPETTVWIRCDVYDTGIGIPENALPNLFRKYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTCSHSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRISNSLLHTTGYPSSTKLNGFAEVSYPVPSNNITPQETASLRDDRCSTAAVTSSELQCSSSHINSNLDNEKSTHGANRNQPDTNARFQNVGVNSLHRSETTKQEDTLEKPSNKLQKTDQGKERSDASSHSRTSSSGSEVTMALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGNWEAAVNAGVEPTTPCWTPSSSRKRMPIIAVSITSLFLFISPRSLDRFIFNRGLNIRMTANALSESADECYENGMDSFVSKPITIQKLKECLEQYLPQRPL 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44190348 44200432 - Maker00016157 Lcy9g1919 643035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1919 1126 Coils Coil 279 299 - -
Lcy9g1919 1126 SMART HKATPase_4 573 763 IPR003594 -
Lcy9g1919 1126 CDD HisKA 461 523 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy9g1919 1126 Coils Coil 183 203 - -
Lcy9g1919 1126 Gene3D - 458 526 - -
Lcy9g1919 1126 Coils Coil 433 453 - -
Lcy9g1919 1126 Pfam Response regulator receiver domain 955 1022 IPR001789 GO:0000160(InterPro)
Lcy9g1919 1126 ProSiteProfiles Histidine kinase domain profile. 469 763 IPR005467 -
Lcy9g1919 1126 FunFam Putative histidine kinase 5 450 527 - -
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 627 678 - -
Lcy9g1919 1126 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 124 1124 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 627 650 - -
Lcy9g1919 1126 CDD HATPase_EvgS-ArcB-TorS-like 578 760 - -
Lcy9g1919 1126 Gene3D PAS domain 304 439 - -
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 861 905 - -
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 906 936 - -
Lcy9g1919 1126 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 686 761 IPR003594 -
Lcy9g1919 1126 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 516 762 IPR036890 -
Lcy9g1919 1126 Gene3D - 1069 1121 - -
Lcy9g1919 1126 Gene3D - 949 1063 - -
Lcy9g1919 1126 FunFam Histidine kinase 5 304 439 - -
Lcy9g1919 1126 SUPERFAMILY CheY-like 953 1123 IPR011006 -
Lcy9g1919 1126 PRINTS Bacterial sensor protein C-terminal signature 723 741 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy9g1919 1126 PRINTS Bacterial sensor protein C-terminal signature 688 702 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy9g1919 1126 PRINTS Bacterial sensor protein C-terminal signature 747 760 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy9g1919 1126 Pfam His Kinase A (phospho-acceptor) domain 464 527 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 861 948 - -
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 660 678 - -
Lcy9g1919 1126 ProSiteProfiles Response regulatory domain profile. 954 1121 IPR001789 GO:0000160(InterPro)
Lcy9g1919 1126 SMART HisKA_10 462 527 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy9g1919 1126 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 462 527 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy9g1919 1126 SMART REC_2 953 1117 IPR001789 GO:0000160(InterPro)
Lcy9g1919 1126 Gene3D - 527 768 IPR036890 -
Lcy9g1919 1126 CDD REC_hyHK_CKI1_RcsC-like 955 1117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1773 Lcy-Chr3:45006886 Lcy9g1919 Lcy-Chr9:44190348 9.39E-27 dispersed
Lcy8g1687 Lcy-Chr8:43444549 Lcy9g1919 Lcy-Chr9:44190348 5.06E-30 dispersed
Lcy9g1919 Lcy-Chr9:44190348 Lcy4g1551 Lcy-Chr4:39208383 1.24E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20698 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1919 - - - 0.0