Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1919 TTAGTCGTGCGTCCTGCAGTTCTATCCTCTTCGTTCGTAAATGTGGCTTCCATCTACGTTTTGACTCGCTTTTTTGCAAATTACTCTGGCTTCATTGTTCTGCATCTGATCATGAATCTGAATTCGAGTTCGGAGTCATCTTTTCACCTCTCTTCTCGGTCGTTTCACATTCGGAGATTTCGTTATGAATTTGGAAGAGTTCCTTCACTATCTTCGGATTTCGCCGTTCTAACATGCATTTCTGAGCATCATCAGCTTTCGCTGATAATTGCCATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGATATCGAAGCCCTTCCTTCTATGTGGCCCGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTTGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACACTATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAAGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCACGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTTGAAATTGATGCTGAGTATGATACAGTGACATACTGGAAGCAGCGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTATACAGCGAGAGCAGATGCTTGCAGAGAAGCTTCACGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTATGGAGAAAGGGTTGCCAGCAAAGAGGGAAATACAATTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATCAATTATATGGGAATGGACATAACTGACCAGGTTAAAAAACGAGAAAAAATGGCAAAACTTCGTGAGGAGATAGCAGTGCAAAAAGCAAAGGAATCAGAGCTGAACAAAACAATTCATATTACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCCTGTCCACCACGAAACTTGATCGGGAACAGCGACATTTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACTTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGACAAATCCTCACCAACTTGATCAGCAACGCAATTAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCACTGGGAAAGGAGAAGAATGCCATAAGAAATCAACGGCCGATAATGCAACGCTTCCAGCAAATGGTTTGCAAGAAGGAACATGTCCTCCAGCCCCTCAGAATGGCTCGTGTGGCCAAAAACACGGTGACAGAAATAATTTGCATTGTGATGCTCCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAATAGAGAAAACAAATCCTGTTCACCTGAAACAACGGTATGGATACGCTGTGATGTATACGACACAGGAATTGGAATACCAGAAAATGCATTACCAAACCTTTTTAGGAAGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGTCTCGGGCTGGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTGACCGTTACCAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCGTACAAGGTTTCAACCACCTGCAGTCATTCCGACGATTCCGATGAGCTCTCAGATGACGAGTCCACAAATGACGAAATGACCGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTTCACTGTCATCTTCTAATGGATCCACAAGGATCTCAAACTCATTATTACATACAACTGGATATCCCAGCTCAACCAAACTCAATGGCTTTGCTGAAGTTTCTTATCCTGTTCCCTCAAACAACATCACACCACAAGAGACTGCTTCTCTTAGAGATGATCGTTGCTCCACTGCTGCAGTAACCTCAAGCGAATTACAATGTTCATCAAGTCATATCAACTCAAATCTCGATAATGAGAAATCAACTCATGGAGCAAACCGAAATCAACCCGACACAAATGCTCGGTTCCAAAATGTCGGTGTGAATTCCCTTCACAGATCAGAAACAACAAAGCAAGAAGATACATTGGAAAAGCCAAGTAATAAACTTCAAAAAACTGATCAGGGGAAAGAGAGATCCGATGCAAGTTCCCATAGCAGAACTAGCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGGATTCTTCTTGTTGAGGATAACAAGACCAATATCATGGTGACTCAGTCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTGGTAACCAATGGAATTGAAGCTGTTCGTGCAGTTCAACGGCGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAACTGGGAGGCAGCTGTAAATGCTGGAGTCGAGCCAACTACACCTTGTTGGACTCCTTCCTCCTCCCGCAAAAGGATGCCCATCATTGCTGTGAGTATCACTTCCCTATTTTTATTTATTAGCCCCAGGAGTCTGGATAGATTTATCTTTAATAGAGGACTAAACATTAGGATGACGGCGAATGCATTGTCAGAGAGCGCAGACGAGTGTTACGAAAACGGCATGGACTCGTTCGTATCGAAGCCAATCACCATCCAAAAGTTAAAAGAATGTCTTGAACAATATTTACCACAACGTCCCTTGTAA 3381 41.73 LVVRPAVLSSSFVNVASIYVLTRFFANYSGFIVLHLIMNLNSSSESSFHLSSRSFHIRRFRYEFGRVPSLSSDFAVLTCISEHHQLSLIIAMVCEMETDVIEDMDIEALPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLHYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASIQREQMLAEKLHENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVMEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPTGKGEECHKKSTADNATLPANGLQEGTCPPAPQNGSCGQKHGDRNNLHCDAPGTPSKSETTMNGNRENKSCSPETTVWIRCDVYDTGIGIPENALPNLFRKYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTCSHSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRISNSLLHTTGYPSSTKLNGFAEVSYPVPSNNITPQETASLRDDRCSTAAVTSSELQCSSSHINSNLDNEKSTHGANRNQPDTNARFQNVGVNSLHRSETTKQEDTLEKPSNKLQKTDQGKERSDASSHSRTSSSGSEVTMALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGNWEAAVNAGVEPTTPCWTPSSSRKRMPIIAVSITSLFLFISPRSLDRFIFNRGLNIRMTANALSESADECYENGMDSFVSKPITIQKLKECLEQYLPQRPL 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44190348 44200432 - Maker00016157 Lcy9g1919 643035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1919 1126 Coils Coil 279 299 - -
Lcy9g1919 1126 SMART HKATPase_4 573 763 IPR003594 -
Lcy9g1919 1126 CDD HisKA 461 523 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy9g1919 1126 Coils Coil 183 203 - -
Lcy9g1919 1126 Gene3D - 458 526 - -
Lcy9g1919 1126 Coils Coil 433 453 - -
Lcy9g1919 1126 Pfam Response regulator receiver domain 955 1022 IPR001789 GO:0000160(InterPro)
Lcy9g1919 1126 ProSiteProfiles Histidine kinase domain profile. 469 763 IPR005467 -
Lcy9g1919 1126 FunFam Putative histidine kinase 5 450 527 - -
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 627 678 - -
Lcy9g1919 1126 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 124 1124 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 627 650 - -
Lcy9g1919 1126 CDD HATPase_EvgS-ArcB-TorS-like 578 760 - -
Lcy9g1919 1126 Gene3D PAS domain 304 439 - -
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 861 905 - -
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 906 936 - -
Lcy9g1919 1126 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 686 761 IPR003594 -
Lcy9g1919 1126 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 516 762 IPR036890 -
Lcy9g1919 1126 Gene3D - 1069 1121 - -
Lcy9g1919 1126 Gene3D - 949 1063 - -
Lcy9g1919 1126 FunFam Histidine kinase 5 304 439 - -
Lcy9g1919 1126 SUPERFAMILY CheY-like 953 1123 IPR011006 -
Lcy9g1919 1126 PRINTS Bacterial sensor protein C-terminal signature 723 741 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy9g1919 1126 PRINTS Bacterial sensor protein C-terminal signature 688 702 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy9g1919 1126 PRINTS Bacterial sensor protein C-terminal signature 747 760 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy9g1919 1126 Pfam His Kinase A (phospho-acceptor) domain 464 527 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 861 948 - -
Lcy9g1919 1126 MobiDBLite consensus disorder prediction 660 678 - -
Lcy9g1919 1126 ProSiteProfiles Response regulatory domain profile. 954 1121 IPR001789 GO:0000160(InterPro)
Lcy9g1919 1126 SMART HisKA_10 462 527 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy9g1919 1126 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 462 527 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy9g1919 1126 SMART REC_2 953 1117 IPR001789 GO:0000160(InterPro)
Lcy9g1919 1126 Gene3D - 527 768 IPR036890 -
Lcy9g1919 1126 CDD REC_hyHK_CKI1_RcsC-like 955 1117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1919 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1773 Lcy-Chr3:45006886 Lcy9g1919 Lcy-Chr9:44190348 9.39E-27 dispersed
Lcy8g1687 Lcy-Chr8:43444549 Lcy9g1919 Lcy-Chr9:44190348 5.06E-30 dispersed
Lcy9g1919 Lcy-Chr9:44190348 Lcy4g1551 Lcy-Chr4:39208383 1.24E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g2314 . 5 1163 Histidine Kinase Gene Family AT2G17820 62.7 0.0e+00 1379.0
Lcy7g1375 . 28 1013 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1349.3
Lcy10g1594 . 23 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1336.6
Lcy3g1254 . 125 1094 Histidine Kinase Gene Family AT2G01830 52.0 1.1e-272 937.2
Lcy8g1364 . 304 1260 Histidine Kinase Gene Family AT2G01830 51.0 6.2e-257 884.8
Lcy4g0365 . 18 831 Histidine Kinase Gene Family AT2G01830 53.9 3.0e-235 812.8
Lcy9g1919 . 92 1121 Histidine Kinase Gene Family AT5G10720 57.2 9.5e-294 1006.9
Lcy13g2291 . 1 1120 Histidine Kinase Gene Family AT1G09570 80.6 0.0e+00 1841.6
Lcy13g2288 . 1 1129 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lcy4g0391 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1227.6
Lcy11g1336 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1203.7
Lcy11g1336 . 13 1061 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1675.6
Lcy5g1781 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.3 0.0e+00 1261.9
Lcy13g2291 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1094.0
Lcy4g0391 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 1.1e-312 1070.1
Lcy13g2288 . 7 1064 Histidine Kinase Gene Family AT2G18790 51.4 8.0e-311 1063.9
Lcy4g0391 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1387.9
Lcy11g1336 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1162.1
Lcy13g2291 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1120.9
Lcy11g1336 . 3 1122 Histidine Kinase Gene Family AT4G16250 76.2 0.0e+00 1721.1
Lcy5g1781 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.2 0.0e+00 1300.4
Lcy13g2291 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1139.8
Lcy4g0391 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.2
Lcy13g2288 . 8 1125 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1087.0
Lcy5g1781 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1401.7
Lcy11g1336 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.5 0.0e+00 1274.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20698 None None None None Lcy TR