Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1923 ATGGAATCAGAGGATTCAGTGAGATTAAGATTGGAGGAATTGCACAAAGATTTGGGGAAGAAACAAAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCTCTACGCAAATCGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACTAGGTTTACGGCCCCGGGGTTTTGGCTTGCTGGTCTCAAGCTTTTCGAGTTTTCTTTGACTCTGCTCTCTAATCATTCTGAGAGACAATACATACAGGCTTGCGTAGCTCAGGCCAAGGAAATTCTGCATCAAATTGACAATCCATCTCCATCTCCACAAAGCACTTCATCAAATGGAGGCTATCTTTTCGAGGGCCATCTCACTGTTGATCCGGAGCCACCCCAGCCCCAGTGGCTGGTACAGTCTAACCTCATGACAGCCGCTGCAGCTACGCTATTTAATGCTGAATCTTCTCAAGGTTCAGCTGAGAACAACAACACTTATGAGAATGCTTCTAATATTTTTCAAGCACTTATGGAAAATCTAGATAACGTTGTAGATGGGCTTATGGATTTAGAAACGGCTAGCGGACCACCAAAAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCCGTAATTACTATAACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGCGCCATTTGCAGGGAAAACTTAGCTGTTGATGACAAGATGCAGGAGTTGCCTTGCAAGCACACATTCCATCCACCTTGTTTGAAGCCATGGCTGGATGAGCATAACTCTTGTCCGATCTGTCGACACGAATTGCCCACCGACGACCATGCATATGAGAGCTGGAAGGAGCGAGAGAAGGAGGCCGAAGAAGAGAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA 945 45.08 MESEDSVRLRLEELHKDLGKKQRFEEAVSTIISLLQDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLAGLKLFEFSLTLLSNHSERQYIQACVAQAKEILHQIDNPSPSPQSTSSNGGYLFEGHLTVDPEPPQPQWLVQSNLMTAAAATLFNAESSQGSAENNNTYENASNIFQALMENLDNVVDGLMDLETASGPPKVPPASKEVVAKLPVITITEEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44247344 44249899 + Maker00016218 Lcy9g1923 643039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1923 314 Coils Coil 285 305 - -
Lcy9g1923 314 Pfam Ring finger domain 233 275 IPR001841 -
Lcy9g1923 314 SUPERFAMILY RING/U-box 228 281 - -
Lcy9g1923 314 MobiDBLite consensus disorder prediction 108 130 - -
Lcy9g1923 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Lcy9g1923 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Lcy9g1923 314 MobiDBLite consensus disorder prediction 108 125 - -
Lcy9g1923 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 281 IPR013083 -
Lcy9g1923 314 CDD RING-H2_RNF126-like 233 275 - -
Lcy9g1923 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Lcy9g1923 314 SMART ring_2 234 274 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0898 Lcy-Chr7:9031150 Lcy9g1923 Lcy-Chr9:44247344 7.30E-18 dispersed
Lcy9g1923 Lcy-Chr9:44247344 Lcy1g2066 Lcy-Chr1:27717482 8.54E-09 dispersed
Lcy9g1923 Lcy-Chr9:44247344 Lcy8g1794 Lcy-Chr8:44335370 1.47E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1923 K16274 - csv:101218065 437.958