Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1923 | ATGGAATCAGAGGATTCAGTGAGATTAAGATTGGAGGAATTGCACAAAGATTTGGGGAAGAAACAAAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCTCTACGCAAATCGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACTAGGTTTACGGCCCCGGGGTTTTGGCTTGCTGGTCTCAAGCTTTTCGAGTTTTCTTTGACTCTGCTCTCTAATCATTCTGAGAGACAATACATACAGGCTTGCGTAGCTCAGGCCAAGGAAATTCTGCATCAAATTGACAATCCATCTCCATCTCCACAAAGCACTTCATCAAATGGAGGCTATCTTTTCGAGGGCCATCTCACTGTTGATCCGGAGCCACCCCAGCCCCAGTGGCTGGTACAGTCTAACCTCATGACAGCCGCTGCAGCTACGCTATTTAATGCTGAATCTTCTCAAGGTTCAGCTGAGAACAACAACACTTATGAGAATGCTTCTAATATTTTTCAAGCACTTATGGAAAATCTAGATAACGTTGTAGATGGGCTTATGGATTTAGAAACGGCTAGCGGACCACCAAAAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCCGTAATTACTATAACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGCGCCATTTGCAGGGAAAACTTAGCTGTTGATGACAAGATGCAGGAGTTGCCTTGCAAGCACACATTCCATCCACCTTGTTTGAAGCCATGGCTGGATGAGCATAACTCTTGTCCGATCTGTCGACACGAATTGCCCACCGACGACCATGCATATGAGAGCTGGAAGGAGCGAGAGAAGGAGGCCGAAGAAGAGAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA | 945 | 45.08 | MESEDSVRLRLEELHKDLGKKQRFEEAVSTIISLLQDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLAGLKLFEFSLTLLSNHSERQYIQACVAQAKEILHQIDNPSPSPQSTSSNGGYLFEGHLTVDPEPPQPQWLVQSNLMTAAAATLFNAESSQGSAENNNTYENASNIFQALMENLDNVVDGLMDLETASGPPKVPPASKEVVAKLPVITITEEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYI | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 44247344 | 44249899 | + | Maker00016218 | Lcy9g1923 | 643039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1923 | 314 | Coils | Coil | 285 | 305 | - | - | |
Lcy9g1923 | 314 | Pfam | Ring finger domain | 233 | 275 | IPR001841 | - | |
Lcy9g1923 | 314 | SUPERFAMILY | RING/U-box | 228 | 281 | - | - | |
Lcy9g1923 | 314 | MobiDBLite | consensus disorder prediction | 108 | 130 | - | - | |
Lcy9g1923 | 314 | FunFam | E3 ubiquitin-protein ligase RNF181 | 195 | 281 | - | - | |
Lcy9g1923 | 314 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 119 | 280 | - | GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Lcy9g1923 | 314 | MobiDBLite | consensus disorder prediction | 108 | 125 | - | - | |
Lcy9g1923 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 281 | IPR013083 | - | |
Lcy9g1923 | 314 | CDD | RING-H2_RNF126-like | 233 | 275 | - | - | |
Lcy9g1923 | 314 | ProSiteProfiles | Zinc finger RING-type profile. | 234 | 275 | IPR001841 | - | |
Lcy9g1923 | 314 | SMART | ring_2 | 234 | 274 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy7g0898 | Lcy-Chr7:9031150 | Lcy9g1923 | Lcy-Chr9:44247344 | 7.30E-18 | dispersed | |
Lcy9g1923 | Lcy-Chr9:44247344 | Lcy1g2066 | Lcy-Chr1:27717482 | 8.54E-09 | dispersed | |
Lcy9g1923 | Lcy-Chr9:44247344 | Lcy8g1794 | Lcy-Chr8:44335370 | 1.47E-18 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1923 | K16274 | - | csv:101218065 | 437.958 |