Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1935 ATGCTGCAGAGAAGTGCTTTTGAGTTGGTTGTGGTAAAGATACGTGTAAAGTTTCTTACACTCATATCTGCCAAAACCCACACTCAGTTGTTCATTTTTTCCCCCAAAATCCCCAAACCAAAACCCACAACAATAATAATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCCAATAAGAGTAGTAGTGAGTCGAACAACAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCACCCCGGAAATGGCCGCCCGTGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCCCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCTTCCGATTGCCTTCTTCTCATTTGTTCCTCGTCAATCGTGGAGGATTTGTCTTTTCAATGGCTGCTATTTTTGTAATTATTTTGGGCCGGTTTGCTACTTTTGCAACCGGCCCTTAA 726 52.62 MLQRSAFELVVVKIRVKFLTLISAKTHTQLFIFSPKIPKPKPTTIIMSSNNELPQSNSAAAEQPKKIKRIRNNSNSNKSSSESNNNNNNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDDHHSHVDDDLTEIIQLPTLGFRLPSSHLFLVNRGGFVFSMAAIFVIILGRFATFATGP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44365003 44366817 - Maker00016927 Lcy9g1935 643051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1935 241 MobiDBLite consensus disorder prediction 73 94 - -
Lcy9g1935 241 Pfam AP2 domain 92 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1935 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 76 184 IPR051032 -
Lcy9g1935 241 SMART rav1_2 93 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1935 241 MobiDBLite consensus disorder prediction 43 94 - -
Lcy9g1935 241 MobiDBLite consensus disorder prediction 43 62 - -
Lcy9g1935 241 Gene3D AP2/ERF domain 93 151 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1935 241 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677(InterPro)
Lcy9g1935 241 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1935 241 FunFam Ethylene-responsive transcription factor 2 92 151 - -
Lcy9g1935 241 CDD AP2 94 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1935 241 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1935 241 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1154 Lcy-Chr9:35551447 Lcy9g1935 Lcy-Chr9:44365003 4.53E-93 dispersed
Lcy9g1625 Lcy-Chr9:41392249 Lcy9g1935 Lcy-Chr9:44365003 3.72E-51 dispersed
Lcy9g1935 Lcy-Chr9:44365003 Lcy9g2084 Lcy-Chr9:45577194 6.44E-24 dispersed
Lcy9g1927 Lcy-Chr9:44281920 Lcy9g1935 Lcy-Chr9:44365003 1.05E-21 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20700 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1935 K09286 - csv:101206242 188.348