Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1937 ATGGACAAGAGAATGGCGTCCTTGTCAGCAGCGCCCAAATGGGTTCCTTCCGGGTTTTCTGGTTCTTGTGACTGGCTATGGAAACTGCAGCAGTGGTGTAAAATGAAGTTTGTGAAGAGGGCAGCCATGGCATTTCCTGTTGAGCTTGTTGTTCTGGTTTTTCTCTTCTGTGCTACCGTTCAAGTGGTGGATTCTGATGATGGAACTACGTTGTTGGACATAAAGAAATCATTCAGGGATGTGGATAATGTTCTATATGACTGGACAAGCTCACCTTCTCCAGACTACTGTATATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTCATCTCTCTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGTGACTGCTCTTCGTTAATAAATCTGGATTTATCGTTTAATGAGATTTATGGAGACATACCCTTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTAGTTCTGAAAAATAATCGGCTTATTGGACCGATTCCGTCGACCTTATCTCAGATTCCAAACTTGAAGGTCTTAGATCTAGCACAGAATAATCTTAGCGGGGAGATACCAAGACTAATTTACTGGAATGAAGTGTTACAATATCTTGGTCTGCGCGGCAACAACTTGGTGGGCACACTATCTCCAGATATGTGTCAGCTCACTGGCTTATGTGATGTGAGAAACAACAGTTTAACTGGCAGCATACCTCAAACTATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTCACTGGAGAGATACCATTCAATATTGGTTTCCTTCAAGTAGCCACATTGTCCTTGCAGGGTAATCAGTTATCAGGTCCCATCCCACCAGTAATAGGTCTTATGCAGGCGCTTGCTGTGCTAGATCTGAGCTGCAACATGTTAACTGGTCCAATCCCTTCCATCCTGGGGAATTTGACTTATACAGAGAAACTGTACTTGCATAGCAACAAGCTCACTGGGTCCATTCCGGCAGAGCTCGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGGAAACTCACTGATTTGTTCGATCTAAACGTTGCTAATAACAACCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACCATTCCGCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAACCTCTCCTCAAATGATCTACGAGGTCCTATTCCAGTCGAGCTGTCTCGGATAGGCAATTTGGATACGTTATCTCCTTTGAATGCAGGAACTTCAGTTTTCTATGCTAATTCTGTTGTCTTTATGTTTATATACTGTAGAGATATTTCACACAATCAGCTCTCTGGATTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACGTCACATCGCTGATTAACTGTCTAAGTCTTACCGAATTAAACGTATCTTATAACAATCTTGTTGGTGACATTCCCACAAGCAACAACTTCTCAAGGTTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAACAACAACAACTACCCCTGTCAAGAAACTCATACGACCGAGCGAGTGACCATATCTAAAGCTGCTATCCTGGGGATTGCTCTTGGTGCCTTGGTGATTCTTCTAATGATCCTCTTGACAGTTTGCCGTCCAAGCAATACAATACCTTTTCCAGATGGAACACTTGATAAACCAGTTACTTATTCAACTCCCAAGCTAGTGATCCTTCACATGAATATGGCGCTTCATGTGTACGAAGATATTATGAGGATGACCGAAAACTTGAGCGAAAAGTACATAATCGGATATGGAGCTTCAAGCACAGTCTACAAATGTGTACTGAAGAACTGCAAACCTGTGGCTATTAAAAAGCTCTACTCTCACCAACCCCTAAGCATGAAGGCATTCGAGACCGAACTCGAAACTGTGGGTAGCATCAAACACAGGAATCTAGTCAGCCTCCAAGGATACTCCTTGTCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGACCATCTACACGGCTCTAGCTCTACCAAGAAGAAAAAGCTAGACTGGGACACAAGGCTTAATATTGCACATGGAGCAGCACAAGGACTGTCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTCAAGTCATCAAACATTCTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTCGGCATCGCCAAGAGTTTATGCACCTCGAAAACATATACGTCCACTTATATCATGGGAACTATCGGATACATTGATCCAGAGTATGCAAGGACTTCCCGACTTACCGAAAAGTCTGATGTTTACAGCTTTGGAATTGTGTTACTTGAATTGCTCACGGGAAGGAAAGCAGTGGACAATGAATCAAATCTCCACCAATTGGTTAGTGCAACTTTATTGTGTGATCTACTTTACTATCAATTATCAGTTGTTTTCTTTTTACCTGTTAGGTATGGGGTGACTATTTTCTCATACTTGTTAATTCATACATCTCAGATCTTATCAAAGACAGCCAACAATGCTGTAATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTTGCTCTCCTATGCACCAAGAGGCAGCCATCCGATCGACCAACAATGCACGAAGTAACGCGCGTCATCGGGAGTCTTCTGCCCTCCGCCACACCACTAAAGCCAACACCAACCATAACAACCATGCCCCCATCAGCAAAAGTCCCTTGTTACAAGGACGAGTACGCAAATCTAAAAACACCACACGTGCTGAACTGCCCGTCGATGAGCACCTCAGACGCCCAGCTCTTCCTCAAGTTCGGAGAGGTTATATCACAGAACAGTGAGTAA 3039 43.47 MDKRMASLSAAPKWVPSGFSGSCDWLWKLQQWCKMKFVKRAAMAFPVELVVLVFLFCATVQVVDSDDGTTLLDIKKSFRDVDNVLYDWTSSPSPDYCIWRGVTCDNATLNVISLDLRGNSLSGQIPDEIGDCSSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLCDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLSPLNAGTSVFYANSVVFMFIYCRDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDVTSLINCLSLTELNVSYNNLVGDIPTSNNFSRFSSDSFLGNLALCGYWNNNNYPCQETHTTERVTISKAAILGIALGALVILLMILLTVCRPSNTIPFPDGTLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHQPLSMKAFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLVSATLLCDLLYYQLSVVFFLPVRYGVTIFSYLLIHTSQILSKTANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIGSLLPSATPLKPTPTITTMPPSAKVPCYKDEYANLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44371168 44378664 - Maker00016430 Lcy9g1937 643053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1937 1012 ProSiteProfiles Leucine-rich repeat profile. 182 204 IPR001611 GO:0005515(InterPro)
Lcy9g1937 1012 ProSitePatterns Protein kinases ATP-binding region signature. 646 669 IPR017441 GO:0005524(InterPro)
Lcy9g1937 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1937 1012 SUPERFAMILY L domain-like 233 558 - -
Lcy9g1937 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 274 364 - -
Lcy9g1937 1012 Pfam Protein kinase domain 643 943 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1937 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 611 715 - -
Lcy9g1937 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 716 862 - -
Lcy9g1937 1012 SUPERFAMILY L domain-like 65 336 - -
Lcy9g1937 1012 Pfam Leucine Rich Repeat 395 417 IPR001611 GO:0005515(InterPro)
Lcy9g1937 1012 Pfam Leucine Rich Repeat 111 132 IPR001611 GO:0005515(InterPro)
Lcy9g1937 1012 Pfam Leucine Rich Repeat 254 273 IPR001611 GO:0005515(InterPro)
Lcy9g1937 1012 Pfam Leucine Rich Repeat 513 531 IPR001611 GO:0005515(InterPro)
Lcy9g1937 1012 Pfam Leucine Rich Repeat 420 439 IPR001611 GO:0005515(InterPro)
Lcy9g1937 1012 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 471 945 IPR050647 GO:0001558(PANTHER)|GO:0010286(PANTHER)
Lcy9g1937 1012 SMART serkin_6 640 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1937 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 106 197 - -
Lcy9g1937 1012 ProSiteProfiles Protein kinase domain profile. 640 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1937 1012 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515(InterPro)
Lcy9g1937 1012 Pfam Leucine rich repeat 300 358 IPR001611 GO:0005515(InterPro)
Lcy9g1937 1012 Pfam Leucine rich repeat N-terminal domain 65 105 IPR013210 -
Lcy9g1937 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 365 452 - -
Lcy9g1937 1012 SUPERFAMILY Protein kinase-like (PK-like) 618 944 IPR011009 -
Lcy9g1937 1012 Gene3D Transferase(Phosphotransferase) domain 1 716 954 - -
Lcy9g1937 1012 Gene3D Ribonuclease Inhibitor 233 560 IPR032675 -
Lcy9g1937 1012 Gene3D Ribonuclease Inhibitor 64 232 IPR032675 -
Lcy9g1937 1012 Gene3D Phosphorylase Kinase; domain 1 610 715 - -
Lcy9g1937 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 204 273 - -
Lcy9g1937 1012 CDD STKc_IRAK 646 949 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1937 Lcy-Chr9:44371168 Lcy7g0396 Lcy-Chr7:3370972 7.55E-61 dispersed
Lcy9g1937 Lcy-Chr9:44371168 Lcy12g1064 Lcy-Chr12:18498706 3.83E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66225 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1937 K20718 - csv:101214398 1641.71