Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1946 ATGGATATGAACGGCAATAAACCTTTGAAAGCTGTTCGAACAAGTTCGTCTCTGAAGGAAGGTGAGAATGGAGGCCAAGTAGTGGTTGAGATTAGCAGAGATGAAAATGGCTACTCTGTGCCGAAGCAAAACAGGGTTGATTCACAAACCAAGGAGCCGACGGATTCGAGCTTTGGTTATGTCTACGATTCACATCTCGCTCCCACTGTGAATAAGCCCCCGAAAATCCCCAGTTCAAATGGAGCCCTCACGCACAGGAAATCTCTCAAAAGATCAATCCTCTCGAAACCCAAATCAAGATTTGGGGAACAGGCGTATTGCATCGATTCAGATATGTTTGACGAGAACCATTTGTCGTCGAGAGAACAAATCGGTGCAATTTCCTCCAGAAGCTCTGCTCTGAACACGCCGAAGGCACAACCTGAGGAAGTAGATGATGAAGATATCGTCAAGATGGAGCAGTTTGACAAAGAGAAGCGCAAGAAATTGAAGGTGAAGACATTGATTAAGTGGGTTGGAGTTCTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCGTTTGAAGAAATGCTTCCTTTGGGGTTTGGAGGTTTGGAAATGGTGTTTGCTTGCAACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGGTTGTGATTTTGATTGAAGGGAACTTTTTGCTTAAGAAGAAAGTGCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACACTTTGGTTGACATTGGTTCTTGTTACATGGGCGTCGTTTTTTGATCGGAGCAACTATAGGACTCCGAGATCGAGGATCACTGGGAAGATTTTGGATGCTGTTACATGGACTCTGGTATCCCTTCTGATAGGGGCATTTTTGTGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCGTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACCCTCTCGAGGCCTCCATTAATTGGTATGGCTGAAAGTACTGCCAAGACCAGCAGTGGTCGATTGAGTTTGAAGGGTAAAAAATCAGAGCATAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTTGATGCTGTTACAAGTTCGGAGATGTCGATCTCGCAAATACTCGATGAAAGCTACCAAAATGTTGCTGATGGTGAGATCACCGATGAAATGGAAGTTGCCAAAGCTGCTGCTTACCAGATCTTCAATAATGTTGCTCTTCCTGGAAACAAGATCATAGAGGAAGAAGATCTTCTGAAATTCATGATCAAAGAAGAAGTTGATCTTGTGTTGCCACTCTTTGGAGTAGATGAGACAGGGCAGATTGACAGGAAAGCTCTAACGAATTTTGTGGTGAAGGTTTATCAAGAGAGGAAAACACTAGCACATGCCCTGAAAGACACTAAAACAGCCGTGAAGCAATTGAATAATATAGTAGCAGCGCTTCTTATAATAGTAACAGCTATTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAATACTTGCAAGACCATATTTGAAGCTCTAATCTTCGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCCGTTGTTGGTTGAAGAAATGAACATCCTGACAACAGTTTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAATTACTACAGAAGTCCAGACATGAGCGACACCGTAGAATTCTCGATCGCTTTCACAACGCCATTGGAGAGGATCGGGACCATGAAAGAGAGAATAAGGAGGTATTTGGAGAAGACTCCACAACACTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATCATAGACGTGAATAAGATAAAGATTGCTCTTTATACAAACCACACCATGAATTTTCAAGATTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAAAATTTTCGAAGAACTGAAGATCAATTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCGGTCGAGGGGCGTTGA 2187 42.66 MDMNGNKPLKAVRTSSSLKEGENGGQVVVEISRDENGYSVPKQNRVDSQTKEPTDSSFGYVYDSHLAPTVNKPPKIPSSNGALTHRKSLKRSILSKPKSRFGEQAYCIDSDMFDENHLSSREQIGAISSRSSALNTPKAQPEEVDDEDIVKMEQFDKEKRKKLKVKTLIKWVGVLCIIGCLVASLTVNRLKKCFLWGLEVWKWCLLATVILCGMIFTHWVMNVVVILIEGNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWASFFDRSNYRTPRSRITGKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLIGMAESTAKTSSGRLSLKGKKSEHKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQNVADGEITDEMEVAKAAAYQIFNNVALPGNKIIEEEDLLKFMIKEEVDLVLPLFGVDETGQIDRKALTNFVVKVYQERKTLAHALKDTKTAVKQLNNIVAALLIIVTAIIWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMSDTVEFSIAFTTPLERIGTMKERIRRYLEKTPQHWHPNHSVVVQEIIDVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKKIFEELKINYNLLPQTVHLFPVEGR 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44456524 44460397 - Maker00016265 Lcy9g1946 643062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1946 728 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 66 722 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Lcy9g1946 728 Gene3D - 566 615 IPR023408 -
Lcy9g1946 728 MobiDBLite consensus disorder prediction 65 84 - -
Lcy9g1946 728 MobiDBLite consensus disorder prediction 37 57 - -
Lcy9g1946 728 FunFam Predicted mechanosensitive ion channel 566 615 - -
Lcy9g1946 728 MobiDBLite consensus disorder prediction 1 60 - -
Lcy9g1946 728 PIRSF Memb_At2g17000 6 726 IPR016688 -
Lcy9g1946 728 Pfam Mechanosensitive ion channel, beta-domain 559 616 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy9g1946 728 SUPERFAMILY Sm-like ribonucleoproteins 556 615 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0950 Lcy-Chr2:8833271 Lcy9g1946 Lcy-Chr9:44456524 1.09E-215 dispersed
Lcy8g1282 Lcy-Chr8:39424517 Lcy9g1946 Lcy-Chr9:44456524 2.70E-149 dispersed
Lcy9g1946 Lcy-Chr9:44456524 Lcy9g2295 Lcy-Chr9:47354698 2.20E-121 dispersed
Lcy9g1945 Lcy-Chr9:44447168 Lcy9g1946 Lcy-Chr9:44456524 2.52E-307 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1946 K22048 - csv:101217197 1078.16