Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1946 | ATGGATATGAACGGCAATAAACCTTTGAAAGCTGTTCGAACAAGTTCGTCTCTGAAGGAAGGTGAGAATGGAGGCCAAGTAGTGGTTGAGATTAGCAGAGATGAAAATGGCTACTCTGTGCCGAAGCAAAACAGGGTTGATTCACAAACCAAGGAGCCGACGGATTCGAGCTTTGGTTATGTCTACGATTCACATCTCGCTCCCACTGTGAATAAGCCCCCGAAAATCCCCAGTTCAAATGGAGCCCTCACGCACAGGAAATCTCTCAAAAGATCAATCCTCTCGAAACCCAAATCAAGATTTGGGGAACAGGCGTATTGCATCGATTCAGATATGTTTGACGAGAACCATTTGTCGTCGAGAGAACAAATCGGTGCAATTTCCTCCAGAAGCTCTGCTCTGAACACGCCGAAGGCACAACCTGAGGAAGTAGATGATGAAGATATCGTCAAGATGGAGCAGTTTGACAAAGAGAAGCGCAAGAAATTGAAGGTGAAGACATTGATTAAGTGGGTTGGAGTTCTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCGTTTGAAGAAATGCTTCCTTTGGGGTTTGGAGGTTTGGAAATGGTGTTTGCTTGCAACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGGTTGTGATTTTGATTGAAGGGAACTTTTTGCTTAAGAAGAAAGTGCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACACTTTGGTTGACATTGGTTCTTGTTACATGGGCGTCGTTTTTTGATCGGAGCAACTATAGGACTCCGAGATCGAGGATCACTGGGAAGATTTTGGATGCTGTTACATGGACTCTGGTATCCCTTCTGATAGGGGCATTTTTGTGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCGTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACCCTCTCGAGGCCTCCATTAATTGGTATGGCTGAAAGTACTGCCAAGACCAGCAGTGGTCGATTGAGTTTGAAGGGTAAAAAATCAGAGCATAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTTGATGCTGTTACAAGTTCGGAGATGTCGATCTCGCAAATACTCGATGAAAGCTACCAAAATGTTGCTGATGGTGAGATCACCGATGAAATGGAAGTTGCCAAAGCTGCTGCTTACCAGATCTTCAATAATGTTGCTCTTCCTGGAAACAAGATCATAGAGGAAGAAGATCTTCTGAAATTCATGATCAAAGAAGAAGTTGATCTTGTGTTGCCACTCTTTGGAGTAGATGAGACAGGGCAGATTGACAGGAAAGCTCTAACGAATTTTGTGGTGAAGGTTTATCAAGAGAGGAAAACACTAGCACATGCCCTGAAAGACACTAAAACAGCCGTGAAGCAATTGAATAATATAGTAGCAGCGCTTCTTATAATAGTAACAGCTATTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAATACTTGCAAGACCATATTTGAAGCTCTAATCTTCGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCCGTTGTTGGTTGAAGAAATGAACATCCTGACAACAGTTTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAATTACTACAGAAGTCCAGACATGAGCGACACCGTAGAATTCTCGATCGCTTTCACAACGCCATTGGAGAGGATCGGGACCATGAAAGAGAGAATAAGGAGGTATTTGGAGAAGACTCCACAACACTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATCATAGACGTGAATAAGATAAAGATTGCTCTTTATACAAACCACACCATGAATTTTCAAGATTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAAAATTTTCGAAGAACTGAAGATCAATTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCGGTCGAGGGGCGTTGA | 2187 | 42.66 | MDMNGNKPLKAVRTSSSLKEGENGGQVVVEISRDENGYSVPKQNRVDSQTKEPTDSSFGYVYDSHLAPTVNKPPKIPSSNGALTHRKSLKRSILSKPKSRFGEQAYCIDSDMFDENHLSSREQIGAISSRSSALNTPKAQPEEVDDEDIVKMEQFDKEKRKKLKVKTLIKWVGVLCIIGCLVASLTVNRLKKCFLWGLEVWKWCLLATVILCGMIFTHWVMNVVVILIEGNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWASFFDRSNYRTPRSRITGKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLIGMAESTAKTSSGRLSLKGKKSEHKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQNVADGEITDEMEVAKAAAYQIFNNVALPGNKIIEEEDLLKFMIKEEVDLVLPLFGVDETGQIDRKALTNFVVKVYQERKTLAHALKDTKTAVKQLNNIVAALLIIVTAIIWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMSDTVEFSIAFTTPLERIGTMKERIRRYLEKTPQHWHPNHSVVVQEIIDVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKKIFEELKINYNLLPQTVHLFPVEGR | 728 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 44456524 | 44460397 | - | Maker00016265 | Lcy9g1946 | 643062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1946 | 728 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 66 | 722 | IPR016688 | GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER) | |
Lcy9g1946 | 728 | Gene3D | - | 566 | 615 | IPR023408 | - | |
Lcy9g1946 | 728 | MobiDBLite | consensus disorder prediction | 65 | 84 | - | - | |
Lcy9g1946 | 728 | MobiDBLite | consensus disorder prediction | 37 | 57 | - | - | |
Lcy9g1946 | 728 | FunFam | Predicted mechanosensitive ion channel | 566 | 615 | - | - | |
Lcy9g1946 | 728 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Lcy9g1946 | 728 | PIRSF | Memb_At2g17000 | 6 | 726 | IPR016688 | - | |
Lcy9g1946 | 728 | Pfam | Mechanosensitive ion channel, beta-domain | 559 | 616 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy9g1946 | 728 | SUPERFAMILY | Sm-like ribonucleoproteins | 556 | 615 | IPR010920 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0950 | Lcy-Chr2:8833271 | Lcy9g1946 | Lcy-Chr9:44456524 | 1.09E-215 | dispersed | |
Lcy8g1282 | Lcy-Chr8:39424517 | Lcy9g1946 | Lcy-Chr9:44456524 | 2.70E-149 | dispersed | |
Lcy9g1946 | Lcy-Chr9:44456524 | Lcy9g2295 | Lcy-Chr9:47354698 | 2.20E-121 | dispersed | |
Lcy9g1945 | Lcy-Chr9:44447168 | Lcy9g1946 | Lcy-Chr9:44456524 | 2.52E-307 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1946 | K22048 | - | csv:101217197 | 1078.16 |