Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1946 ATGGATATGAACGGCAATAAACCTTTGAAAGCTGTTCGAACAAGTTCGTCTCTGAAGGAAGGTGAGAATGGAGGCCAAGTAGTGGTTGAGATTAGCAGAGATGAAAATGGCTACTCTGTGCCGAAGCAAAACAGGGTTGATTCACAAACCAAGGAGCCGACGGATTCGAGCTTTGGTTATGTCTACGATTCACATCTCGCTCCCACTGTGAATAAGCCCCCGAAAATCCCCAGTTCAAATGGAGCCCTCACGCACAGGAAATCTCTCAAAAGATCAATCCTCTCGAAACCCAAATCAAGATTTGGGGAACAGGCGTATTGCATCGATTCAGATATGTTTGACGAGAACCATTTGTCGTCGAGAGAACAAATCGGTGCAATTTCCTCCAGAAGCTCTGCTCTGAACACGCCGAAGGCACAACCTGAGGAAGTAGATGATGAAGATATCGTCAAGATGGAGCAGTTTGACAAAGAGAAGCGCAAGAAATTGAAGGTGAAGACATTGATTAAGTGGGTTGGAGTTCTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCGTTTGAAGAAATGCTTCCTTTGGGGTTTGGAGGTTTGGAAATGGTGTTTGCTTGCAACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGGTTGTGATTTTGATTGAAGGGAACTTTTTGCTTAAGAAGAAAGTGCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACACTTTGGTTGACATTGGTTCTTGTTACATGGGCGTCGTTTTTTGATCGGAGCAACTATAGGACTCCGAGATCGAGGATCACTGGGAAGATTTTGGATGCTGTTACATGGACTCTGGTATCCCTTCTGATAGGGGCATTTTTGTGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCGTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACCCTCTCGAGGCCTCCATTAATTGGTATGGCTGAAAGTACTGCCAAGACCAGCAGTGGTCGATTGAGTTTGAAGGGTAAAAAATCAGAGCATAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTTGATGCTGTTACAAGTTCGGAGATGTCGATCTCGCAAATACTCGATGAAAGCTACCAAAATGTTGCTGATGGTGAGATCACCGATGAAATGGAAGTTGCCAAAGCTGCTGCTTACCAGATCTTCAATAATGTTGCTCTTCCTGGAAACAAGATCATAGAGGAAGAAGATCTTCTGAAATTCATGATCAAAGAAGAAGTTGATCTTGTGTTGCCACTCTTTGGAGTAGATGAGACAGGGCAGATTGACAGGAAAGCTCTAACGAATTTTGTGGTGAAGGTTTATCAAGAGAGGAAAACACTAGCACATGCCCTGAAAGACACTAAAACAGCCGTGAAGCAATTGAATAATATAGTAGCAGCGCTTCTTATAATAGTAACAGCTATTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAATACTTGCAAGACCATATTTGAAGCTCTAATCTTCGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCCGTTGTTGGTTGAAGAAATGAACATCCTGACAACAGTTTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAATTACTACAGAAGTCCAGACATGAGCGACACCGTAGAATTCTCGATCGCTTTCACAACGCCATTGGAGAGGATCGGGACCATGAAAGAGAGAATAAGGAGGTATTTGGAGAAGACTCCACAACACTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATCATAGACGTGAATAAGATAAAGATTGCTCTTTATACAAACCACACCATGAATTTTCAAGATTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAAAATTTTCGAAGAACTGAAGATCAATTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCGGTCGAGGGGCGTTGA 2187 42.66 MDMNGNKPLKAVRTSSSLKEGENGGQVVVEISRDENGYSVPKQNRVDSQTKEPTDSSFGYVYDSHLAPTVNKPPKIPSSNGALTHRKSLKRSILSKPKSRFGEQAYCIDSDMFDENHLSSREQIGAISSRSSALNTPKAQPEEVDDEDIVKMEQFDKEKRKKLKVKTLIKWVGVLCIIGCLVASLTVNRLKKCFLWGLEVWKWCLLATVILCGMIFTHWVMNVVVILIEGNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWASFFDRSNYRTPRSRITGKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLIGMAESTAKTSSGRLSLKGKKSEHKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQNVADGEITDEMEVAKAAAYQIFNNVALPGNKIIEEEDLLKFMIKEEVDLVLPLFGVDETGQIDRKALTNFVVKVYQERKTLAHALKDTKTAVKQLNNIVAALLIIVTAIIWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMSDTVEFSIAFTTPLERIGTMKERIRRYLEKTPQHWHPNHSVVVQEIIDVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKKIFEELKINYNLLPQTVHLFPVEGR 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44456524 44460397 - Maker00016265 Lcy9g1946 643062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1946 728 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 66 722 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Lcy9g1946 728 Gene3D - 566 615 IPR023408 -
Lcy9g1946 728 MobiDBLite consensus disorder prediction 65 84 - -
Lcy9g1946 728 MobiDBLite consensus disorder prediction 37 57 - -
Lcy9g1946 728 FunFam Predicted mechanosensitive ion channel 566 615 - -
Lcy9g1946 728 MobiDBLite consensus disorder prediction 1 60 - -
Lcy9g1946 728 PIRSF Memb_At2g17000 6 726 IPR016688 -
Lcy9g1946 728 Pfam Mechanosensitive ion channel, beta-domain 559 616 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy9g1946 728 SUPERFAMILY Sm-like ribonucleoproteins 556 615 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1946 K22048 - - csv:101217197 1078.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0950 Lcy-Chr2:8833271 Lcy9g1946 Lcy-Chr9:44456524 1.09E-215 dispersed
Lcy8g1282 Lcy-Chr8:39424517 Lcy9g1946 Lcy-Chr9:44456524 2.70E-149 dispersed
Lcy9g1946 Lcy-Chr9:44456524 Lcy9g2295 Lcy-Chr9:47354698 2.20E-121 dispersed
Lcy9g1945 Lcy-Chr9:44447168 Lcy9g1946 Lcy-Chr9:44456524 2.52E-307 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1988 . 849 1284 Mechanosensitive Ion Channel Family AT4G00290 62.8 2.0e-152 536.6
Lcy6g1111 . 93 801 Mechanosensitive Ion Channel Family AT5G10490 55.3 4.0e-193 672.2
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.5e-86 317.4
Lcy6g1111 . 122 769 Mechanosensitive Ion Channel Family AT1G58200 51.7 3.3e-166 582.8
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT1G58200 62.5 7.6e-99 359.0
Lcy8g1282 . 49 935 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.5e-267 919.1
Lcy3g0859 . 93 946 Mechanosensitive Ion Channel Family AT1G53470 51.7 7.1e-238 821.2
Lcy8g1282 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 53.7 2.0e-250 862.8
Lcy8g1282 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.8e-292 1001.9
Lcy3g0859 . 63 944 Mechanosensitive Ion Channel Family AT1G78610 57.1 8.0e-271 930.6
Lcy8g1282 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.2e-238 821.6
Lcy3g0859 . 273 943 Mechanosensitive Ion Channel Family AT2G17000 59.8 2.3e-225 779.6
Lcy8g1282 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 50.6 2.5e-163 573.2
Lcy9g1946 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 53.2 2.7e-182 636.3
Lcy2g0950 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 7.0e-199 691.4
Lcy9g1946 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 56.5 1.7e-197 686.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57