Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1957 ATGGAGGATCGGGAGGAGGAGGAGAAGGCAGAGGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAAAGGTACTTCAATTTTCTTAGCATGCGCCTCTTTGATTCTGAGCAAATGCAGGAACTGAGAATTGTTCGAACTGAACCGTTGGATTCGTTCCTGAATTGCGTACATAGTGCAATGAGCTTCAGGAGATGTGGCTTTTTCACGCCCTTTAATCTTCAACATTTCGATGGTGCTTCTGTTATTTTGTCTTCTTGGCGATGGATGTTGGAAAGAAAGTTGGCCTCCTCAGATGTACCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTCTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGCCGTGAGAAGAAATCTGGTGATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTGATGCGAGGACAGGTGGAACACGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCCGAGTACTTGTATTTGATAATGGAATATCTGCCCGGTGGAGATATGATGACTCTGCTTATGAGGGAAGACACATTGACTGAAAGTGTGGCTAAATTTTACATTGCACAAAGTGTTCTTGCAATAGAATCTATCCACAGGCACAACTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATTTGGCAGAACCAATGGATATTGATGATAATAGGAGTAGTTGGAAGAGTGCCAGTGAACAGCTACAGCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACGGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGGATGGAGTGCGACTGA 1140 41.58 MEDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERYFNFLSMRLFDSEQMQELRIVRTEPLDSFLNCVHSAMSFRRCGFFTPFNLQHFDGASVILSSWRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTESVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSASEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECD 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44530573 44536826 - Maker00016559 Lcy9g1957 643073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1957 379 ProSiteProfiles Protein kinase domain profile. 156 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1957 379 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 379 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lcy9g1957 379 CDD MobB_NDR_LATS-like 27 151 - -
Lcy9g1957 379 Gene3D Phosphorylase Kinase; domain 1 147 241 - -
Lcy9g1957 379 Pfam Protein kinase domain 157 306 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1957 379 FunFam Probable serine/threonine-protein kinase cot-1 239 379 - -
Lcy9g1957 379 SUPERFAMILY Protein kinase-like (PK-like) 139 379 IPR011009 -
Lcy9g1957 379 Gene3D Transferase(Phosphotransferase) domain 1 242 379 - -
Lcy9g1957 379 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524(InterPro)
Lcy9g1957 379 FunFam Non-specific serine/threonine protein kinase 117 239 - -
Lcy9g1957 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1957 379 SMART serkin_6 156 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1277 Lcy-Chr3:38645228 Lcy9g1957 Lcy-Chr9:44530573 3.37E-131 dispersed
Lcy9g1957 Lcy-Chr9:44530573 Lcy5g1821 Lcy-Chr5:40981273 2.42E-25 dispersed
Lcy13g2073 Lcy-Chr13:39651446 Lcy9g1957 Lcy-Chr9:44530573 3.04E-122 wgd
Lcy2g0938 Lcy-Chr2:8673721 Lcy9g1957 Lcy-Chr9:44530573 2.13E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66227 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1957 K08790 - csv:101212228 536.569