Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1966 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACACAGGAAGTCTGATAAGGAAGACAATGAGAAGTTGGGGAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGCACATAGAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCTGATTCTTTTACCGCTGCTGTCGCCACTGTCCTCCGTGCTCAGCCGAAAGATTTCAGGGTTGTTCGCCAAGAATGGGCTGCAATTCGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAAGGCCTTGAAGGGAGTGGTGAGGCTTCAGGCTCTGGTTAGAGGTCGTTTGGTGAGAAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTGCGAGTTCAAGCTCGAGTCAGGGCGCGTCGTGTGAGGATGTCGGTCGAAGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGTCTGATCTCTTGAAACAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGAACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCATCTTCACGAACAAACGCTTCAATTTACGCTCTTAAGAATTACGAATTTGACAAGAGCAACTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACCGATTCCTTTGAGGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTGTGTCTAAACATTCCAAATGTTCTGAACCAAGTTTGGTGAAAGTTAGGAAGAACAATGTATCTACTAGAATTTCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGCTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACGTCGACAACTCCCGTGTCTGGGCATGCTTTCTCAACCATAGAAAGAACAGAGAATAGCAATTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAGGCAAAGCAGAAAACAAATAGTCACTTATCGCATAGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAATCAGCAGCTTTCTCAAATGCAGATTCTAAGAGTAGTGCTGGCTCTGATTCATCAGTCAACCCCTTTAAGCCATTAATGCTGCCAACACGATCGGATAAGAATGGAACAAAGCTAAGGTCATGA 1335 46.37 MGGSGKWMKVLIGHRKSDKEDNEKLGSKTKKWRLWRSPSGDLSSAWKGYKGAHRAASEGSDSPRAADSFTAAVATVLRAQPKDFRVVRQEWAAIRIQTAFRGFLSRRALKALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKSDLLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSSSRTNASIYALKNYEFDKSNWGWSWLERWMAAKPWETRLMEQSRTDSFEVTPPSKSCTESVVSKHSKCSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENSNYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNADSKSSAGSDSSVNPFKPLMLPTRSDKNGTKLRS 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44620560 44622518 + Maker00016898 Lcy9g1966 643082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1966 444 MobiDBLite consensus disorder prediction 410 444 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 410 428 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 305 324 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 376 398 - -
Lcy9g1966 444 ProSiteProfiles IQ motif profile. 113 140 - -
Lcy9g1966 444 PANTHER IQ-DOMAIN 5-RELATED 6 397 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 11 27 - -
Lcy9g1966 444 ProSiteProfiles IQ motif profile. 89 117 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 1 27 - -
Lcy9g1966 444 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
Lcy9g1966 444 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
Lcy9g1966 444 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Lcy9g1966 444 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Lcy9g1966 444 FunFam IQ-domain 11 88 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1966 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1354 Lcy-Chr2:15361572 Lcy9g1966 Lcy-Chr9:44620560 2.15E-43 dispersed
Lcy4g1146 Lcy-Chr4:23782856 Lcy9g1966 Lcy-Chr9:44620560 1.43E-21 dispersed
Lcy5g0267 Lcy-Chr5:2528251 Lcy9g1966 Lcy-Chr9:44620560 9.86E-24 dispersed
Lcy6g2334 Lcy-Chr6:48126325 Lcy9g1966 Lcy-Chr9:44620560 3.99E-08 dispersed
Lcy7g0669 Lcy-Chr7:6192034 Lcy9g1966 Lcy-Chr9:44620560 1.43E-25 dispersed
Lcy9g1966 Lcy-Chr9:44620560 Lcy9g2245 Lcy-Chr9:46984099 3.08E-11 dispersed
Lcy5g2292 Lcy-Chr5:45896704 Lcy9g1966 Lcy-Chr9:44620560 1.28E-10 transposed
Lcy3g2222 Lcy-Chr3:49048518 Lcy9g1966 Lcy-Chr9:44620560 4.26E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39