Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1966 | ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACACAGGAAGTCTGATAAGGAAGACAATGAGAAGTTGGGGAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGCACATAGAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCTGATTCTTTTACCGCTGCTGTCGCCACTGTCCTCCGTGCTCAGCCGAAAGATTTCAGGGTTGTTCGCCAAGAATGGGCTGCAATTCGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAAGGCCTTGAAGGGAGTGGTGAGGCTTCAGGCTCTGGTTAGAGGTCGTTTGGTGAGAAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTGCGAGTTCAAGCTCGAGTCAGGGCGCGTCGTGTGAGGATGTCGGTCGAAGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGTCTGATCTCTTGAAACAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGAACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCATCTTCACGAACAAACGCTTCAATTTACGCTCTTAAGAATTACGAATTTGACAAGAGCAACTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACCGATTCCTTTGAGGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTGTGTCTAAACATTCCAAATGTTCTGAACCAAGTTTGGTGAAAGTTAGGAAGAACAATGTATCTACTAGAATTTCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGCTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACGTCGACAACTCCCGTGTCTGGGCATGCTTTCTCAACCATAGAAAGAACAGAGAATAGCAATTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAGGCAAAGCAGAAAACAAATAGTCACTTATCGCATAGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAATCAGCAGCTTTCTCAAATGCAGATTCTAAGAGTAGTGCTGGCTCTGATTCATCAGTCAACCCCTTTAAGCCATTAATGCTGCCAACACGATCGGATAAGAATGGAACAAAGCTAAGGTCATGA | 1335 | 46.37 | MGGSGKWMKVLIGHRKSDKEDNEKLGSKTKKWRLWRSPSGDLSSAWKGYKGAHRAASEGSDSPRAADSFTAAVATVLRAQPKDFRVVRQEWAAIRIQTAFRGFLSRRALKALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKSDLLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSSSRTNASIYALKNYEFDKSNWGWSWLERWMAAKPWETRLMEQSRTDSFEVTPPSKSCTESVVSKHSKCSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENSNYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNADSKSSAGSDSSVNPFKPLMLPTRSDKNGTKLRS | 444 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 44620560 | 44622518 | + | Maker00016898 | Lcy9g1966 | 643082 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1966 | 444 | MobiDBLite | consensus disorder prediction | 410 | 444 | - | - | |
Lcy9g1966 | 444 | MobiDBLite | consensus disorder prediction | 410 | 428 | - | - | |
Lcy9g1966 | 444 | MobiDBLite | consensus disorder prediction | 305 | 324 | - | - | |
Lcy9g1966 | 444 | MobiDBLite | consensus disorder prediction | 376 | 398 | - | - | |
Lcy9g1966 | 444 | ProSiteProfiles | IQ motif profile. | 113 | 140 | - | - | |
Lcy9g1966 | 444 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 397 | - | - | |
Lcy9g1966 | 444 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - | |
Lcy9g1966 | 444 | ProSiteProfiles | IQ motif profile. | 89 | 117 | - | - | |
Lcy9g1966 | 444 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lcy9g1966 | 444 | Pfam | IQ calmodulin-binding motif | 91 | 110 | IPR000048 | GO:0005515(InterPro) | |
Lcy9g1966 | 444 | Pfam | IQ calmodulin-binding motif | 113 | 130 | IPR000048 | GO:0005515(InterPro) | |
Lcy9g1966 | 444 | SMART | iq_5 | 111 | 132 | IPR000048 | GO:0005515(InterPro) | |
Lcy9g1966 | 444 | SMART | iq_5 | 88 | 110 | IPR000048 | GO:0005515(InterPro) | |
Lcy9g1966 | 444 | FunFam | IQ-domain 11 | 88 | 139 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g1354 | Lcy-Chr2:15361572 | Lcy9g1966 | Lcy-Chr9:44620560 | 2.15E-43 | dispersed | |
Lcy4g1146 | Lcy-Chr4:23782856 | Lcy9g1966 | Lcy-Chr9:44620560 | 1.43E-21 | dispersed | |
Lcy5g0267 | Lcy-Chr5:2528251 | Lcy9g1966 | Lcy-Chr9:44620560 | 9.86E-24 | dispersed | |
Lcy6g2334 | Lcy-Chr6:48126325 | Lcy9g1966 | Lcy-Chr9:44620560 | 3.99E-08 | dispersed | |
Lcy7g0669 | Lcy-Chr7:6192034 | Lcy9g1966 | Lcy-Chr9:44620560 | 1.43E-25 | dispersed | |
Lcy9g1966 | Lcy-Chr9:44620560 | Lcy9g2245 | Lcy-Chr9:46984099 | 3.08E-11 | dispersed | |
Lcy5g2292 | Lcy-Chr5:45896704 | Lcy9g1966 | Lcy-Chr9:44620560 | 1.28E-10 | transposed | |
Lcy3g2222 | Lcy-Chr3:49048518 | Lcy9g1966 | Lcy-Chr9:44620560 | 4.26E-28 | wgd |
Pathway information
