Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1966 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACACAGGAAGTCTGATAAGGAAGACAATGAGAAGTTGGGGAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGCACATAGAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCTGATTCTTTTACCGCTGCTGTCGCCACTGTCCTCCGTGCTCAGCCGAAAGATTTCAGGGTTGTTCGCCAAGAATGGGCTGCAATTCGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAAGGCCTTGAAGGGAGTGGTGAGGCTTCAGGCTCTGGTTAGAGGTCGTTTGGTGAGAAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTGCGAGTTCAAGCTCGAGTCAGGGCGCGTCGTGTGAGGATGTCGGTCGAAGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGTCTGATCTCTTGAAACAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGAACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCATCTTCACGAACAAACGCTTCAATTTACGCTCTTAAGAATTACGAATTTGACAAGAGCAACTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACCGATTCCTTTGAGGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTGTGTCTAAACATTCCAAATGTTCTGAACCAAGTTTGGTGAAAGTTAGGAAGAACAATGTATCTACTAGAATTTCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGCTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACGTCGACAACTCCCGTGTCTGGGCATGCTTTCTCAACCATAGAAAGAACAGAGAATAGCAATTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAGGCAAAGCAGAAAACAAATAGTCACTTATCGCATAGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAATCAGCAGCTTTCTCAAATGCAGATTCTAAGAGTAGTGCTGGCTCTGATTCATCAGTCAACCCCTTTAAGCCATTAATGCTGCCAACACGATCGGATAAGAATGGAACAAAGCTAAGGTCATGA 1335 46.37 MGGSGKWMKVLIGHRKSDKEDNEKLGSKTKKWRLWRSPSGDLSSAWKGYKGAHRAASEGSDSPRAADSFTAAVATVLRAQPKDFRVVRQEWAAIRIQTAFRGFLSRRALKALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKSDLLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSSSRTNASIYALKNYEFDKSNWGWSWLERWMAAKPWETRLMEQSRTDSFEVTPPSKSCTESVVSKHSKCSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENSNYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNADSKSSAGSDSSVNPFKPLMLPTRSDKNGTKLRS 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44620560 44622518 + Maker00016898 Lcy9g1966 643082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1966 444 MobiDBLite consensus disorder prediction 410 444 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 410 428 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 305 324 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 376 398 - -
Lcy9g1966 444 ProSiteProfiles IQ motif profile. 113 140 - -
Lcy9g1966 444 PANTHER IQ-DOMAIN 5-RELATED 6 397 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 11 27 - -
Lcy9g1966 444 ProSiteProfiles IQ motif profile. 89 117 - -
Lcy9g1966 444 MobiDBLite consensus disorder prediction 1 27 - -
Lcy9g1966 444 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
Lcy9g1966 444 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
Lcy9g1966 444 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Lcy9g1966 444 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Lcy9g1966 444 FunFam IQ-domain 11 88 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1354 Lcy-Chr2:15361572 Lcy9g1966 Lcy-Chr9:44620560 2.15E-43 dispersed
Lcy4g1146 Lcy-Chr4:23782856 Lcy9g1966 Lcy-Chr9:44620560 1.43E-21 dispersed
Lcy5g0267 Lcy-Chr5:2528251 Lcy9g1966 Lcy-Chr9:44620560 9.86E-24 dispersed
Lcy6g2334 Lcy-Chr6:48126325 Lcy9g1966 Lcy-Chr9:44620560 3.99E-08 dispersed
Lcy7g0669 Lcy-Chr7:6192034 Lcy9g1966 Lcy-Chr9:44620560 1.43E-25 dispersed
Lcy9g1966 Lcy-Chr9:44620560 Lcy9g2245 Lcy-Chr9:46984099 3.08E-11 dispersed
Lcy5g2292 Lcy-Chr5:45896704 Lcy9g1966 Lcy-Chr9:44620560 1.28E-10 transposed
Lcy3g2222 Lcy-Chr3:49048518 Lcy9g1966 Lcy-Chr9:44620560 4.26E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1966 - - - 0.0