Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1967 | ATGGATGATTTCTTTCGAACAGTGTTGGCGAGTGTGCCTTTGGGAGTCGGGGCAATATTGTTCACGACGTTGTGCGTCGTGGGAGGGGGTTTGGTTTATTTCTATGGACCGTACTGGGGAGTGAGAAGGGTGCCTGGTCCACCAGCTATTCCACTGGTCGGACACCTTCCCTTGCTGGCTAAGTACGGCCCAGACGTTTTCTCTGTCCTCGCCTCCCAATATGGCCCTATCTTCAGGTTCCATATGGGTAGGCAGCCATTGATAATTATTGCAGACCCTGAGCTTTGTAAGGAAGTTGGTATCAAGAAATTTAAGGACATCCCAAATAGAAGTGTCCCTTCTCCAATATCAGCTTCCCCGCTTCATCAGAAAGGTCTTTTCTTCACAAGAGATGCAAGATGGTCGACAATGCGAAACACAATATTATCGGTCTATCAGCCCTCTCATCTAACGAGACTAATACCTACTATGCAATCAATCATTGAAACTGCAACTCAAAATCTCCATTCCTCTGTCGAGGAAGACATCCCTTTCTCCAATCTCTCCCTCAAATTGACCACCGATGTGATTGGAACTGCAGCCTTCGGCGTCAACTTTGGGCTCTCTAATCCACAAGCAACCAAAACTTGTGTTACCAATGGCCAAGACAACAAAAATGATGAAGTTTCGGACTTCATCAATCAACATATCTACTCCACAACGCAGCTCAAGATGGATTTATCAGGTTCCTTCTCGATCATTTTGGGACTACTTGTCCCTATACTCCAAGAACCATTTAGACAAGTCCTGAAGAGAATACCATTCACCATGGATTGGAAAGTTGACAGGACAAATCAGAAGTTGAGTGGTCGGCTCAACGAGATTGTAGACAAGAGAATGAAGTGTAACGATCGAGGTTCAAAAGACTTCTTATCACTTATTCTGAGAGCAAGAGAGTCAGAGACGGTAGCAAGGGATGTCTTCACTCCAGACTACATCAGTGCAGTCACGTACGAACATCTACTTGCTGGGTCAGCTACCACGGCGTTCACACTGTCTTCTGTCGTATATTTAGTTGCTGGACATCCAGAGGTTGAGAAGAAGTTGCTAGAAGAGATTGACAACTTTGGTCCATCAGATCAGATGCCAACAGCCAATGATCTTCAGCAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGGTTCTACACTGTTTCCCCGCTAGTAGCTAGAGAGACATCTAAAGATGTGGAGATTGGTGGATATCTTCTTCCAAAGGGAACATGGGTTTGGTTAGCACTTGGAGTTCTTGCCAAGGATCCAAAGAACTTTCCTGAACCAGATAAATTTAAACCAGAGAGGTTTGATCCAAACGAGGAAGAGGAGAAACAAAGGCATCCCTATGCTTTAATCCCATTTGGAATTGGTCCTCGAGCATGCATTGGTCAAAAATTCGCCCTTCAGGAGATGAAGCTCTCTCTGATTCATTTGTATAGGAAGTTTGTATTCCGACATTCCCTTTCCATGGAACAACCTCTTGAACTTGAGTATGGTGTCATTCTCAGCTTCAAGAATGGTGTCAAGCTCAGAGTAATAAACCGCAAATAG | 1596 | 44.49 | MDDFFRTVLASVPLGVGAILFTTLCVVGGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQPSHLTRLIPTMQSIIETATQNLHSSVEEDIPFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCVTNGQDNKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPILQEPFRQVLKRIPFTMDWKVDRTNQKLSGRLNEIVDKRMKCNDRGSKDFLSLILRARESETVARDVFTPDYISAVTYEHLLAGSATTAFTLSSVVYLVAGHPEVEKKLLEEIDNFGPSDQMPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPDKFKPERFDPNEEEEKQRHPYALIPFGIGPRACIGQKFALQEMKLSLIHLYRKFVFRHSLSMEQPLELEYGVILSFKNGVKLRVINRK | 531 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 44621530 | 44625701 | - | Maker00016537 | Lcy9g1967 | 643083 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1967 | 531 | Pfam | Cytochrome P450 | 45 | 509 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | Gene3D | Cytochrome P450 | 35 | 531 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | FunFam | Cytochrome P450 3A4 | 32 | 531 | - | - | |
| Lcy9g1967 | 531 | PRINTS | E-class P450 group I signature | 325 | 342 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | E-class P450 group I signature | 389 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | E-class P450 group I signature | 429 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | E-class P450 group I signature | 71 | 90 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | E-class P450 group I signature | 185 | 203 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | E-class P450 group I signature | 466 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | E-class P450 group I signature | 476 | 499 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | E-class P450 group I signature | 345 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 469 | 478 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | P450 superfamily signature | 390 | 401 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | P450 superfamily signature | 476 | 487 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | P450 superfamily signature | 467 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PRINTS | P450 superfamily signature | 336 | 353 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1967 | 531 | PANTHER | THROMBOXANE-A SYNTHASE | 23 | 530 | - | - | |
| Lcy9g1967 | 531 | SUPERFAMILY | Cytochrome P450 | 37 | 530 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g1967 | Lcy-Chr9:44621530 | Lcy9g2060 | Lcy-Chr9:45393459 | 4.67E-31 | dispersed | |
| Lcy9g1967 | Lcy-Chr9:44621530 | Lcy9g2056 | Lcy-Chr9:45366291 | 9.26E-30 | transposed | |
| Lcy9g1967 | Lcy-Chr9:44621530 | Lcy6g1081 | Lcy-Chr6:12030175 | 4.52E-29 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g1967 | K20771 | - | csv:101209772 | 1018.45 |