Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1971 ATGATGATGAAAGGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCATCTGGTCAAGTAACAAGAAATGAAGCCACCGACCCTCTGTATTCTCATCACTCCTCTGCTTCCACAAATCAACCCCCACCACCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGATGCCGAGGTGATAGCCTTGTCGCCAAAAGCGCTTTTGGCGACGAACAGATTTGTATGTGAGATCTGCAACAAGGGGTTTCAAAGAGATCAAAATCTTCAACTCCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAACCAACATGCGTTCACCATCACCCATCAAGGGCTCTAGGGGATCTAACTGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAAAAGAAGTGGAAGTGCGAAAAGTGCTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCGATGTTTTGGCTCAGGAAAGTACCAATTTTACATCATCAGCCATAAATAACAACAACCCAATAATGTTCCCATCTCTTCGCTCTTTTCCTCTTAAAACTGAAAACCAAGACCCATTTTTTCCTTTAACTGAAAACAGTAACAATAATATCCTCATTCCTTTTCACAACCCTCCACAAAACCCTAACCCTACTTCATTCGGATTCGGGTTTCCGGGTCCGGGCTCTGCATGGGAATTGAATTCCCCAGCTGAAACTGCTCCACTTTTTCACCACATGATGGCTTTCGAAGAGGCGTCGTTCGAAGAAGCCTTGAGCGGGATACTGATGAATAGTAATAAAGGTGGTAGAGACGGCGGCGGTGGCGCTGCCGGAGAGATAACGAGGGATTTTCTGGGGCTGAGGGCGGTGGCGCGACAGGCGGATCATCGGCTGTTCGAGAATGAGACGATGATAAACGACATGTCGAATTTGGATTCTTCTTCTTCTTCGACGTTTGGATTGCAACAGACTCAGACGACATTTTGGTGTGATTAA 1149 46.91 MMMKGNLMVDENLSVLTCASGQVTRNEATDPLYSHHSSASTNQPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESTNFTSSAINNNNPIMFPSLRSFPLKTENQDPFFPLTENSNNNILIPFHNPPQNPNPTSFGFGFPGPGSAWELNSPAETAPLFHHMMAFEEASFEEALSGILMNSNKGGRDGGGGAAGEITRDFLGLRAVARQADHRLFENETMINDMSNLDSSSSSTFGLQQTQTTFWCD 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44649215 44651376 + Maker00016919 Lcy9g1971 643087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1971 382 MobiDBLite consensus disorder prediction 32 66 - -
Lcy9g1971 382 MobiDBLite consensus disorder prediction 41 56 - -
Lcy9g1971 382 FunFam protein indeterminate-domain 5, chloroplastic-like 135 214 - -
Lcy9g1971 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Lcy9g1971 382 FunFam protein indeterminate-domain 12-like 60 128 - -
Lcy9g1971 382 SMART c2h2final6 81 103 IPR013087 -
Lcy9g1971 382 SMART c2h2final6 157 177 IPR013087 -
Lcy9g1971 382 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Lcy9g1971 382 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 183 223 - -
Lcy9g1971 382 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 156 180 - -
Lcy9g1971 382 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 285 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy9g1971 382 SUPERFAMILY beta-beta-alpha zinc fingers 80 177 IPR036236 -
Lcy9g1971 382 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 118 152 - -
Lcy9g1971 382 Gene3D Classic Zinc Finger 62 128 - -
Lcy9g1971 382 Gene3D Classic Zinc Finger 135 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2166 Lcy-Chr4:48231451 Lcy9g1971 Lcy-Chr9:44649215 1.19E-23 dispersed
Lcy5g2598 Lcy-Chr5:48629609 Lcy9g1971 Lcy-Chr9:44649215 5.81E-68 dispersed
Lcy7g1523 Lcy-Chr7:27211414 Lcy9g1971 Lcy-Chr9:44649215 4.56E-46 dispersed
Lcy9g1971 Lcy-Chr9:44649215 Lcy9g2183 Lcy-Chr9:46486329 7.03E-102 dispersed
Lcy3g2220 Lcy-Chr3:49025676 Lcy9g1971 Lcy-Chr9:44649215 3.41E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20702 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1971 K25870 - csv:101215280 501.901