Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1971 | ATGATGATGAAAGGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCATCTGGTCAAGTAACAAGAAATGAAGCCACCGACCCTCTGTATTCTCATCACTCCTCTGCTTCCACAAATCAACCCCCACCACCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGATGCCGAGGTGATAGCCTTGTCGCCAAAAGCGCTTTTGGCGACGAACAGATTTGTATGTGAGATCTGCAACAAGGGGTTTCAAAGAGATCAAAATCTTCAACTCCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAACCAACATGCGTTCACCATCACCCATCAAGGGCTCTAGGGGATCTAACTGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAAAAGAAGTGGAAGTGCGAAAAGTGCTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCGATGTTTTGGCTCAGGAAAGTACCAATTTTACATCATCAGCCATAAATAACAACAACCCAATAATGTTCCCATCTCTTCGCTCTTTTCCTCTTAAAACTGAAAACCAAGACCCATTTTTTCCTTTAACTGAAAACAGTAACAATAATATCCTCATTCCTTTTCACAACCCTCCACAAAACCCTAACCCTACTTCATTCGGATTCGGGTTTCCGGGTCCGGGCTCTGCATGGGAATTGAATTCCCCAGCTGAAACTGCTCCACTTTTTCACCACATGATGGCTTTCGAAGAGGCGTCGTTCGAAGAAGCCTTGAGCGGGATACTGATGAATAGTAATAAAGGTGGTAGAGACGGCGGCGGTGGCGCTGCCGGAGAGATAACGAGGGATTTTCTGGGGCTGAGGGCGGTGGCGCGACAGGCGGATCATCGGCTGTTCGAGAATGAGACGATGATAAACGACATGTCGAATTTGGATTCTTCTTCTTCTTCGACGTTTGGATTGCAACAGACTCAGACGACATTTTGGTGTGATTAA | 1149 | 46.91 | MMMKGNLMVDENLSVLTCASGQVTRNEATDPLYSHHSSASTNQPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESTNFTSSAINNNNPIMFPSLRSFPLKTENQDPFFPLTENSNNNILIPFHNPPQNPNPTSFGFGFPGPGSAWELNSPAETAPLFHHMMAFEEASFEEALSGILMNSNKGGRDGGGGAAGEITRDFLGLRAVARQADHRLFENETMINDMSNLDSSSSSTFGLQQTQTTFWCD | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 44649215 | 44651376 | + | Maker00016919 | Lcy9g1971 | 643087 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1971 | 382 | MobiDBLite | consensus disorder prediction | 32 | 66 | - | - | |
Lcy9g1971 | 382 | MobiDBLite | consensus disorder prediction | 41 | 56 | - | - | |
Lcy9g1971 | 382 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 135 | 214 | - | - | |
Lcy9g1971 | 382 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 81 | 103 | IPR013087 | - | |
Lcy9g1971 | 382 | FunFam | protein indeterminate-domain 12-like | 60 | 128 | - | - | |
Lcy9g1971 | 382 | SMART | c2h2final6 | 81 | 103 | IPR013087 | - | |
Lcy9g1971 | 382 | SMART | c2h2final6 | 157 | 177 | IPR013087 | - | |
Lcy9g1971 | 382 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 83 | 103 | IPR013087 | - | |
Lcy9g1971 | 382 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 183 | 223 | - | - | |
Lcy9g1971 | 382 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 156 | 180 | - | - | |
Lcy9g1971 | 382 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 38 | 285 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy9g1971 | 382 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 177 | IPR036236 | - | |
Lcy9g1971 | 382 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 118 | 152 | - | - | |
Lcy9g1971 | 382 | Gene3D | Classic Zinc Finger | 62 | 128 | - | - | |
Lcy9g1971 | 382 | Gene3D | Classic Zinc Finger | 135 | 214 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g2166 | Lcy-Chr4:48231451 | Lcy9g1971 | Lcy-Chr9:44649215 | 1.19E-23 | dispersed | |
Lcy5g2598 | Lcy-Chr5:48629609 | Lcy9g1971 | Lcy-Chr9:44649215 | 5.81E-68 | dispersed | |
Lcy7g1523 | Lcy-Chr7:27211414 | Lcy9g1971 | Lcy-Chr9:44649215 | 4.56E-46 | dispersed | |
Lcy9g1971 | Lcy-Chr9:44649215 | Lcy9g2183 | Lcy-Chr9:46486329 | 7.03E-102 | dispersed | |
Lcy3g2220 | Lcy-Chr3:49025676 | Lcy9g1971 | Lcy-Chr9:44649215 | 3.41E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20702 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1971 | K25870 | - | csv:101215280 | 501.901 |