Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1979 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGACTTAATGAGCACCAGCGATTGAACGATGCCCGACCTGTGACGCGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCGGGTTCGTCTTCTTCTGGGTCTATGGCGTCTTCCACTACAATGGGGAGATTGGAGGCCGTTGAATCGGTCGTTGATCGGACGGCTTCTGGGGATGTGGCCGGTGGGTGCGTGGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGCGCTTCTGATCCTGATTCGAGACAAGACACTGAGTCCGCTCAGATCGATGCCGCTAAGCGGATGAGCCTTGGCTGTTCGCCTTCCGTCTCCGGCAGTCAAGCCCTCGCCGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATACGGCATTACTGCAAACTCTAGCACTCGAGGAAAGATGCCACTGTTGGTTGATCTTAAAGAAATATGTGTTACAAGTGATATTGATTATGAAGTGATTCTAGTTAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAGTATGGCTTTATTTTAAGTGGCCTGGTTCAAAAAATTGCTGATATTGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGGAGATGGACCCTTAGGAGTTATGAGTTGCGTAGTTCTCTGAACACTATTATTCTACCACTTGGACGCCTTGATATTGGACTTGCACGTCATAGAGCTTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCGAGCTGTCAATTTTCGAATTATGGCTTTGATCGGAGACCCACAGATGTTATAGCGGTTCCTGAAGATACGCCAGTATTACAAAATGAAGGAACCGAAGCAATATCGATTTCTTCTCCTCAAGATGGAGTAGCAAATATTTGCAACTTAATATCCAAAGAAGCTTCAGACTTAGGTGCTGAATCAAAAGAAAACGTTGGGAACTTTATTGAAGAAATTCAAACTGGGAGTTCTGATTATGATTTTGGGAAACTTCTAGAATCAGAAAGCAACGCATGTGAAAGTTCATTGGGTGCATGTGCACAGTCGGCGTCTGCACAAAAGAAGAAAGTTAAAAAAGTATCAAAGTATGTCATAAGTGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCGCCTCCTGCAGATTTGTTTTCAGATATAGATTCACAGGACAATGCTGAAAGCAAAGCGATTCATCAAATGTATCCAATCAATGGAAAAGGCATGGATGTTGGGCTTCAGTGCGACACTTTTGTGTTAGCAAGCCACGTGCAGTCTTCTGCTACTTCTACTGAAGCAGAGTATTTGAACAATGTTGTACATGAGAATAAGCAGAAAATGATTACTGAGGGATCATCGGAAGATAAAAAACCCGAGACAAATGTGAACAAGCACGGCATTTTTTGGCCTCACAGTATGACAAATGAGGGGTTTGTGTTTGTTGATGTTAATGGTGAAGCAGGCAAACTGGTTGATGTTAATGGAACATTTCATCGTGAACATGTGGATGGTGTTTCGTTAATCTCTGATGCTAACTCTCATAAAAAACAACTAGGAAGTGCCTTAGTGGATGAAGAAAGAAGATGGTTGCAAGATAAGAGTGGTGGGACTATTCAGTGTTTTGATTTTCGTGAAAATCCATCAGAAAATTTGATGGAACTTAATAATAGTAACCTGCATGCTAGTGATGACCACAGTGACACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATCGGTATTGGTAAGACACAAGGTTATCCTGAAAACAGTTTCCAGAACAAGTCATTGGTTTTCTTAATGAATAATGGCCTTCCTCTTATCCCAGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGACCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTTGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCTCATTTCTCTATCCTTACAGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAATTCTCAGCTTGATGAAAGGAGACGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTTCATAGAGATCTAAAGTCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAATACATTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCGGCGGACGAGAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGTTGACAACATGCCGCATCCCATGGAAAGGTTTGAATCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGTGATTGTTGGCAAAGGGACACGCAATTGAGGCCGTCGTTCTCTCAGCTTATTACTCGATTGCGGCGCCTTCAACGGCTTGTTCAGAAAACAAACTCCAGTAATCACATACCGGAGTGA 2982 42.89 MSKMKHLLRKLHIGGGLNEHQRLNDARPVTRPSSSPSPGPSPNSNPSGSSSSGSMASSTTMGRLEAVESVVDRTASGDVAGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSVSGSQALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPTDVIAVPEDTPVLQNEGTEAISISSPQDGVANICNLISKEASDLGAESKENVGNFIEEIQTGSSDYDFGKLLESESNACESSLGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNAESKAIHQMYPINGKGMDVGLQCDTFVLASHVQSSATSTEAEYLNNVVHENKQKMITEGSSEDKKPETNVNKHGIFWPHSMTNEGFVFVDVNGEAGKLVDVNGTFHREHVDGVSLISDANSHKKQLGSALVDEERRWLQDKSGGTIQCFDFRENPSENLMELNNSNLHASDDHSDTINPILGEVAEWEIPWEDLHIGERIGIGKTQGYPENSFQNKSLVFLMNNGLPLIPGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPADEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQRDTQLRPSFSQLITRLRRLQRLVQKTNSSNHIPE 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44705340 44715110 + Maker00016950 Lcy9g1979 643095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1979 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1979 993 Pfam Protein tyrosine and serine/threonine kinase 731 975 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1979 993 SUPERFAMILY Protein kinase-like (PK-like) 732 983 IPR011009 -
Lcy9g1979 993 FunFam Serine/threonine-protein kinase CTR1 802 985 - -
Lcy9g1979 993 Gene3D Phosphorylase Kinase; domain 1 726 800 - -
Lcy9g1979 993 Gene3D Transferase(Phosphotransferase) domain 1 802 989 - -
Lcy9g1979 993 MobiDBLite consensus disorder prediction 44 62 - -
Lcy9g1979 993 Pfam Ethylene-responsive protein kinase Le-CTR1 138 342 - -
Lcy9g1979 993 PANTHER SERINE-THREONINE PROTEIN KINASE 43 978 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy9g1979 993 CDD STKc_MAP3K-like 732 975 - -
Lcy9g1979 993 ProSiteProfiles Protein kinase domain profile. 723 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1979 993 PRINTS Tyrosine kinase catalytic domain signature 836 854 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1979 993 PRINTS Tyrosine kinase catalytic domain signature 902 924 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1979 993 PRINTS Tyrosine kinase catalytic domain signature 946 968 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1979 993 PRINTS Tyrosine kinase catalytic domain signature 883 893 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1979 993 PRINTS Tyrosine kinase catalytic domain signature 797 810 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1979 993 FunFam Serine/threonine-protein kinase isoform 1 723 801 - -
Lcy9g1979 993 MobiDBLite consensus disorder prediction 13 62 - -
Lcy9g1979 993 SMART serkin_6 723 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2069 Lcy-Chr5:43806326 Lcy9g1979 Lcy-Chr9:44705340 2.48E-40 dispersed
Lcy8g1568 Lcy-Chr8:42310050 Lcy9g1979 Lcy-Chr9:44705340 1.87E-65 dispersed
Lcy8g1647 Lcy-Chr8:43105935 Lcy9g1979 Lcy-Chr9:44705340 4.87E-44 dispersed
Lcy9g1679 Lcy-Chr9:42015894 Lcy9g1979 Lcy-Chr9:44705340 4.67E-94 dispersed
Lcy9g1979 Lcy-Chr9:44705340 Lcy1g0953 Lcy-Chr1:8358026 7.15E-29 dispersed
Lcy9g1979 Lcy-Chr9:44705340 Lcy9g1980 Lcy-Chr9:44717564 4.97E-307 tandem
Lcy12g0852 Lcy-Chr12:11767451 Lcy9g1979 Lcy-Chr9:44705340 1.83E-98 transposed
Lcy2g1757 Lcy-Chr2:27980964 Lcy9g1979 Lcy-Chr9:44705340 3.51E-38 transposed
Lcy5g2386 Lcy-Chr5:46649161 Lcy9g1979 Lcy-Chr9:44705340 1.49E-153 transposed
Lcy13g2091 Lcy-Chr13:39893780 Lcy9g1979 Lcy-Chr9:44705340 3.45E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66228 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1979 K04424 - csv:101214554 1646.33