Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1980 ATGGTCAGGAAGCCTTGCGACAATCGCAGAATCTATCTGACTGGAGTAGATTTCCCTCTAACCTCTTCACCTTCTTTATCTCAATCCCCTTTTCCTTTATGTGTTTTTCTGCTGCAGGTTTCGAGGAATCATTTAGAATTCGGACAGTTAAGGAATGCGTTGATCAATACATATTTGCCTGTCAATAAAGGTGGAGTGGGTGGTGGAGTATATAACTTCTTGACGGCTCAGAAGAGATATCAGTCGAGCTATGTTGGGAACCTAGCTCGAAGAGTGCGTGATGCAGATGAGGCCAGTGAAGTCGCTCATCTTAAAGAACTCTTCCGTCGTAATGATCCCGAAGCTGTCATAAGATTATTTGAGACTCAGCCGTCATTGCACCACAATGCTACTGCGCTTTCTGAATATGTTAAAGCATTGGTGAAAGTTGATAGGCTTGATGAAAGTGAACTACTCAAGACATTGCAGAGAGGCATTTCAAATGCATCTAGGGGAGAGGAAAGCATCGGTAGCATAGCGGCTTTTAGAAATGTTGGAAAACATTCAAAAGAAGGTATTCTTGGAACCTCTAATTCTCCGATCCATATGGTGGCTACTGAAGGGGGGCACTTTAAGGAGCAGCTCTGGCGCACAATTCGCACCATTGCACTGGCCTTTCTCTTGATTTCTGGTGTAGGAGCACTCATTGAGGATAGAGGAATTAGCAAAGGTCTTGGTTTGAATGAAGAAGTGCAACCTAGCATGGAATCTAATACAAAATTCAATGATGTCAAGGGTGTGGATGAGGCTAAGGCAGAGCTTGAAGAAATTGTTCACTACCTTCGAGATCCCAAGCGGTTCACTCGTTTGGGTGGCAAGCTCCCAAAAGGTGTTCTACTTGTTGGTCCACCTGGAACTGGCAAGACAATGTTAGCAAGAGCGATTGCTGGAGAAGCTGGGGTACCATTCTTCTCCTGCAGTGGCAGTGAGTTTGAAGAGATGTTTGTTGGTGTTGGGGCTAGAAGAGTGAGGGATTTATTTTCAGCTGCAAAAAAGCGATCACCATGTATTATTTTCATTGATGAGATTGATGCCATTGGAGGAAGCCGTAACCCCAAGGACCAACAGTACATGAAAATGACTCTTAACCAGTTACTCGTTGAACTAGATGGCTTTAAGCAAAATGAAGGAATAATTGTCATTGCAGCAACTAACTTTCCAGAGTCTTTGGACAAGGCATTAGTAAGACCTGGTCGATTTGATCGCCACATTGTTGTACCTAATCCAGATGTTGAAGGACGAAGGCAGATCCTGGAATCACATATGTCAAAGGTAGAATTTTCTTCCTTCAAAACTACTGCTTTCTTTTTAGTACCTGTGTGTCTCAGCCTAGTCGGCCAGTGCCAAGTTATACCAAATAGTTGTGTCACATACCATATTGATGGTAAGATACTGAAGGCAGATGATGTTGATATGATGATCATTGCGAGAGGAACTCCTGGTTTTTCTGGTGCTGATCTTGCAAATTTAGTTAATATAGCTGCTTTGAAGGCTGCAATGGATGGTGCTAAAGCAGTGAGCATGGATGATCTAGAATTTGCAAAGGATAAGATTATGATGGGAAGTGAGCGCAAGTCGGCCGTTATTTCTGATGAGTCACGAAAATTGACTGCATTCCATGAGGGTGGCCATGCCCTTGTGGCAATCCACACTGATGGAGCGCTTCCAGTTCACAAGGCCACAATTGTTCCAAGAGGAATGGCTCTTGGCATGGTTGCACAATTGCCTGAAAAGGATGAGACTAGTGTCTCCCGCAAACAGATGCTTGCTCGTCTTGATGTTTGCATGGGAGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAATGAAGTTACTTCTGGCGCTTCGTCTGATTTGCAGCAAGCAACTTCTCTTGCCAGAGCTATGGTTACCAAGTATGGAATGAGCAAAGAAGTGGGGCTTGTCGCCCACAATTACGATGACAATGGGAAAAGCATGAGCACGGAAACAAGGCTTCTTATTGAGAAGGAAGTGAAGAACTTCTTAGAAGCGGCCTACACCAATGCAAAAACAATTCTTACTACCCATAACAAGGAGCTTCACGCCCTTGCTAATGCCTTGCTTGAACAAGAGACACTCTCTGGTAGTCAGATTATGGCTCTTCTTGCACAAATTTCACTGGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAGTATGGCTTTATTTTAAGTGGCCTGGTTCAAAAAATTGCTGATATTGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGGAGATGGACCCTTAGGAGTTATGAGTTGCGTAGTTCTCTGAACACTATTATTCTACCACTTGGACGCCTTGATATTGGACTTGCACGTCATAGAGCTTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCGAGCTGTCAATTTTCGAATTATGGCTTTGATCGGAGACCCACAGATGTTATAGCAGTTCCTGAAGATACGCCAGTATTACAAAATGAAGGAACCGAAGCAATATCAATTTCTTCTCCTCAAGATGGAGTAGCAAATATTTGCAACTTAATATCCAAAGAAGCTTCAGACTTAGGTGCTGAATCAAAAGAAAACTCGGCGTCTGCACAAAAGAAGAAAGTTAAAAAAGTATCAAAGTATGTCATAAGTGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCGCCTCCTGCAGATTTGTTTTCAGATATAGATTCACAGGACAATGCTGAAAGCAAAGCGATTCATCAAATGTATCCAATCAATGGAAAAGGCATGGATGTTGGGCTTCAGTGCGACACTTTTGTGTTAGCAAGCCACGTGCAGTCTTCTGCTACTTCTACTGAAGCAGAGTATTTGAACAATGTTGTACATGAGAATAAGCAGAAAATGATTACTGAGGGATCATCGGAAGATAAAAAACCCGAGACAAATGTGAACAAGCACGGCATTTTTTGGCCTCACAGTATGACAAATGAGGGGTTTGTGTTTGTTGATGTTAATGGTGAAGCAGGCAAACTGGTTGATGTTAATGGAACATTTCATCGTGAACATGTGGATGGTGTTTCGTTAATCTCTGATGCTAACTCTCATAAAAAACAACTAGGAAGTGCCTTAGTGGATGAAGAAAGAAGATGGTTGCAAGATAAGAGTGGTGGGACTATTCAGTGTTTTGATTTTCGTGAAAATCCATCAGAAAATTTGATGGAACTTAATGATAGTAACCTGCATGCTAGTGATGGCCACAGTGACACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCATACCATTCTGTATGCGAATTGTTCGCTTGTTTAG 3582 42.32 MVRKPCDNRRIYLTGVDFPLTSSPSLSQSPFPLCVFLLQVSRNHLEFGQLRNALINTYLPVNKGGVGGGVYNFLTAQKRYQSSYVGNLARRVRDADEASEVAHLKELFRRNDPEAVIRLFETQPSLHHNATALSEYVKALVKVDRLDESELLKTLQRGISNASRGEESIGSIAAFRNVGKHSKEGILGTSNSPIHMVATEGGHFKEQLWRTIRTIALAFLLISGVGALIEDRGISKGLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVEFSSFKTTAFFLVPVCLSLVGQCQVIPNSCVTYHIDGKILKADDVDMMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVSMDDLEFAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLPEKDETSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATSLARAMVTKYGMSKEVGLVAHNYDDNGKSMSTETRLLIEKEVKNFLEAAYTNAKTILTTHNKELHALANALLEQETLSGSQIMALLAQISLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPTDVIAVPEDTPVLQNEGTEAISISSPQDGVANICNLISKEASDLGAESKENSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNAESKAIHQMYPINGKGMDVGLQCDTFVLASHVQSSATSTEAEYLNNVVHENKQKMITEGSSEDKKPETNVNKHGIFWPHSMTNEGFVFVDVNGEAGKLVDVNGTFHREHVDGVSLISDANSHKKQLGSALVDEERRWLQDKSGGTIQCFDFRENPSENLMELNDSNLHASDGHSDTINPILGEVAEWEIPWEDLHTILYANCSLV 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44717564 44724915 + Maker00016558 Lcy9g1980 643096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1980 1193 FunFam ATP-dependent zinc metalloprotease FtsH 535 729 - -
Lcy9g1980 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 546 IPR027417 -
Lcy9g1980 1193 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 10 736 IPR005936 GO:0004176(InterPro)|GO:0004222(InterPro)|GO:0016020(InterPro)
Lcy9g1980 1193 SMART AAA_5 287 423 IPR003593 GO:0016887(InterPro)
Lcy9g1980 1193 ProSitePatterns AAA-protein family signature. 391 409 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy9g1980 1193 Pfam AAA+ lid domain 482 525 IPR041569 -
Lcy9g1980 1193 FunFam ATP-dependent zinc metalloprotease FtsH 466 535 - -
Lcy9g1980 1193 Pfam ATPase family associated with various cellular activities (AAA) 291 420 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy9g1980 1193 Gene3D Peptidase M41 535 730 IPR037219 GO:0004176(InterPro)|GO:0004222(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Lcy9g1980 1193 CDD RecA-like_FtsH 252 419 - -
Lcy9g1980 1193 PANTHER METALLOPROTEASE M41 FTSH 94 441 - GO:0004176(PANTHER)|GO:0006508(PANTHER)|GO:0009534(PANTHER)
Lcy9g1980 1193 SUPERFAMILY FtsH protease domain-like 541 725 IPR037219 GO:0004176(InterPro)|GO:0004222(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Lcy9g1980 1193 Gene3D - 422 534 - -
Lcy9g1980 1193 Pfam Peptidase family M41 541 720 IPR000642 GO:0004176(InterPro)|GO:0004222(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Lcy9g1980 1193 FunFam ATP-dependent zinc metalloprotease FTSH 4 240 421 - -
Lcy9g1980 1193 Pfam Ethylene-responsive protein kinase Le-CTR1 708 866 - -
Lcy9g1980 1193 Gene3D - 239 421 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1980 Lcy-Chr9:44717564 Lcy9g2307 Lcy-Chr9:47469957 1.10E-124 dispersed
Lcy9g1972 Lcy-Chr9:44655146 Lcy9g1980 Lcy-Chr9:44717564 0 proximal
Lcy9g1979 Lcy-Chr9:44705340 Lcy9g1980 Lcy-Chr9:44717564 4.97E-307 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1980 K08955 - csv:101209284 1174.46