Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1989 ATGGGAATCTGTATATCCACTGCATCTTCTCAGATTCGCCATGAAACTGAAGGTGGAGAGCTCGTTTTCGAAGAAGATCATAGCTCTGTCTGTGGGATTCAGAAACTGGATTCCATTTGTTCCAAGCAAGGCAGCAAAGGGCTCAACCAAGATGCTGCCTTTTTCTATCAGGAGTATGGAGAGCCGGACACGGCTTTGTTTGGAGTATTTGATGGGCATGGGATGAATGGTCATATTGTGAGCAACATGGTGAAGAATAGACTGCCTTGGCTGTTGCTTGGGCAGAGAAATGCTATGTCAAAAAATTTGGACGACGACAGAGATTCTCGAAATCACTTCGATGTTAGAGATGGGGAATTGGTGCAAAGTAAGAATTTTGTTTCGTGGAAAGAATCTGTCGTCACTGCCTTTAAGGTGATGGACAAGGAGATAAAACTTCAAGAAAATTTGGATTGCTCTAACAGCGGATCCACTGCTGTTATCGCTGTCAAACAGGGAGAAGATTTGGTGATTGCAAATTTGGGGGATTCGAGGGCAGTGATGGGAAGAATTACGGACGAGGGAATCAAGGCCATTCAATTAACGACTGATTTGAAACCTGGTTTGCCAAATGAGGCTGAGCGAATAAGGAGATGTAAAGGGAGAGTGTTGGCGTTGAAAGAAGAACCCCATATACAGAGAGTGTGGCTACCTAATGAAGACTCGCCGGGGCTGGCCATGTCCAGAGCTTTTGGAGACTTTGCTCTTAAAGACCATGGCCTTATTGCTCTTCCCGACGTCTCCTACCGCCGTCTAACCTCCGACGACTGCTTCATCGTCCTCGCCACCGATGGGATCTGGGACGTGCTGAGCAACAACCAAGTAGCGTCGATCGTGTGGGCGGCGGAGAGCGAAGAAGCAGCGGCGAAAGCACTGGTGGATGCGGCGGCGGAGGCTTGGAAACGCTACCCTTCTTCCAAACTCGACGACTGCACCGTCGTTTGCCAGTTTTTACAAACCCAACGCCAGAGGGAAGATTGA 1020 48.53 MGICISTASSQIRHETEGGELVFEEDHSSVCGIQKLDSICSKQGSKGLNQDAAFFYQEYGEPDTALFGVFDGHGMNGHIVSNMVKNRLPWLLLGQRNAMSKNLDDDRDSRNHFDVRDGELVQSKNFVSWKESVVTAFKVMDKEIKLQENLDCSNSGSTAVIAVKQGEDLVIANLGDSRAVMGRITDEGIKAIQLTTDLKPGLPNEAERIRRCKGRVLALKEEPHIQRVWLPNEDSPGLAMSRAFGDFALKDHGLIALPDVSYRRLTSDDCFIVLATDGIWDVLSNNQVASIVWAAESEEAAAKALVDAAAEAWKRYPSSKLDDCTVVCQFLQTQRQRED 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44765427 44767844 + Maker00016266 Lcy9g1989 643105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1989 339 ProSiteProfiles PPM-type phosphatase domain profile. 36 331 IPR001932 -
Lcy9g1989 339 ProSitePatterns PPM-type phosphatase domain signature. 66 74 IPR000222 GO:0043169(InterPro)
Lcy9g1989 339 SMART PP2C_4 24 329 IPR001932 -
Lcy9g1989 339 SUPERFAMILY PP2C-like 38 331 IPR036457 -
Lcy9g1989 339 PANTHER PROTEIN PHOSPHATASE 38 329 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy9g1989 339 CDD PP2Cc 38 328 IPR001932 -
Lcy9g1989 339 Pfam Protein phosphatase 2C 40 311 IPR001932 -
Lcy9g1989 339 Gene3D - 35 334 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1522 Lcy-Chr8:41844103 Lcy9g1989 Lcy-Chr9:44765427 2.23E-91 dispersed
Lcy9g1917 Lcy-Chr9:44161374 Lcy9g1989 Lcy-Chr9:44765427 5.39E-11 dispersed
Lcy9g1989 Lcy-Chr9:44765427 Lcy6g0218 Lcy-Chr6:1986861 4.63E-08 dispersed
Lcy9g1989 Lcy-Chr9:44765427 Lcy4g1251 Lcy-Chr4:28606587 6.70E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1989 - - - 0.0