Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1989 | ATGGGAATCTGTATATCCACTGCATCTTCTCAGATTCGCCATGAAACTGAAGGTGGAGAGCTCGTTTTCGAAGAAGATCATAGCTCTGTCTGTGGGATTCAGAAACTGGATTCCATTTGTTCCAAGCAAGGCAGCAAAGGGCTCAACCAAGATGCTGCCTTTTTCTATCAGGAGTATGGAGAGCCGGACACGGCTTTGTTTGGAGTATTTGATGGGCATGGGATGAATGGTCATATTGTGAGCAACATGGTGAAGAATAGACTGCCTTGGCTGTTGCTTGGGCAGAGAAATGCTATGTCAAAAAATTTGGACGACGACAGAGATTCTCGAAATCACTTCGATGTTAGAGATGGGGAATTGGTGCAAAGTAAGAATTTTGTTTCGTGGAAAGAATCTGTCGTCACTGCCTTTAAGGTGATGGACAAGGAGATAAAACTTCAAGAAAATTTGGATTGCTCTAACAGCGGATCCACTGCTGTTATCGCTGTCAAACAGGGAGAAGATTTGGTGATTGCAAATTTGGGGGATTCGAGGGCAGTGATGGGAAGAATTACGGACGAGGGAATCAAGGCCATTCAATTAACGACTGATTTGAAACCTGGTTTGCCAAATGAGGCTGAGCGAATAAGGAGATGTAAAGGGAGAGTGTTGGCGTTGAAAGAAGAACCCCATATACAGAGAGTGTGGCTACCTAATGAAGACTCGCCGGGGCTGGCCATGTCCAGAGCTTTTGGAGACTTTGCTCTTAAAGACCATGGCCTTATTGCTCTTCCCGACGTCTCCTACCGCCGTCTAACCTCCGACGACTGCTTCATCGTCCTCGCCACCGATGGGATCTGGGACGTGCTGAGCAACAACCAAGTAGCGTCGATCGTGTGGGCGGCGGAGAGCGAAGAAGCAGCGGCGAAAGCACTGGTGGATGCGGCGGCGGAGGCTTGGAAACGCTACCCTTCTTCCAAACTCGACGACTGCACCGTCGTTTGCCAGTTTTTACAAACCCAACGCCAGAGGGAAGATTGA | 1020 | 48.53 | MGICISTASSQIRHETEGGELVFEEDHSSVCGIQKLDSICSKQGSKGLNQDAAFFYQEYGEPDTALFGVFDGHGMNGHIVSNMVKNRLPWLLLGQRNAMSKNLDDDRDSRNHFDVRDGELVQSKNFVSWKESVVTAFKVMDKEIKLQENLDCSNSGSTAVIAVKQGEDLVIANLGDSRAVMGRITDEGIKAIQLTTDLKPGLPNEAERIRRCKGRVLALKEEPHIQRVWLPNEDSPGLAMSRAFGDFALKDHGLIALPDVSYRRLTSDDCFIVLATDGIWDVLSNNQVASIVWAAESEEAAAKALVDAAAEAWKRYPSSKLDDCTVVCQFLQTQRQRED | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 44765427 | 44767844 | + | Maker00016266 | Lcy9g1989 | 643105 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1989 | 339 | ProSiteProfiles | PPM-type phosphatase domain profile. | 36 | 331 | IPR001932 | - | |
Lcy9g1989 | 339 | ProSitePatterns | PPM-type phosphatase domain signature. | 66 | 74 | IPR000222 | GO:0043169(InterPro) | |
Lcy9g1989 | 339 | SMART | PP2C_4 | 24 | 329 | IPR001932 | - | |
Lcy9g1989 | 339 | SUPERFAMILY | PP2C-like | 38 | 331 | IPR036457 | - | |
Lcy9g1989 | 339 | PANTHER | PROTEIN PHOSPHATASE | 38 | 329 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Lcy9g1989 | 339 | CDD | PP2Cc | 38 | 328 | IPR001932 | - | |
Lcy9g1989 | 339 | Pfam | Protein phosphatase 2C | 40 | 311 | IPR001932 | - | |
Lcy9g1989 | 339 | Gene3D | - | 35 | 334 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy8g1522 | Lcy-Chr8:41844103 | Lcy9g1989 | Lcy-Chr9:44765427 | 2.23E-91 | dispersed | |
Lcy9g1917 | Lcy-Chr9:44161374 | Lcy9g1989 | Lcy-Chr9:44765427 | 5.39E-11 | dispersed | |
Lcy9g1989 | Lcy-Chr9:44765427 | Lcy6g0218 | Lcy-Chr6:1986861 | 4.63E-08 | dispersed | |
Lcy9g1989 | Lcy-Chr9:44765427 | Lcy4g1251 | Lcy-Chr4:28606587 | 6.70E-100 | transposed |
Pathway information
