Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1994 ATGATGATCGGCGAACAATCTAGATTCAACCACACCATTCAAGTCCCCCCCTGGGACCCACTCGAGGACCACCACATGACCGGAATTTCCTCGCCGGTCTTCCTCTCCGGTGGGGTCGACTCCTTTATCGACTCATTTTCCGCCATTCATCCTTACCTTCCTTCGGCCGCGGATTCCGACGAACTCGACGCGGCGGTGGATGGGTTTTCCTGTGATCATTTCCGGATGTTCGAGTTCAAAATACGGAGATGCGCGCGTGGGAGGTCGCACGATTGGACTGAATGTCCGTATGCCCATCCCGGCGAGAAGGCTCGCCGGCGGGATCCGAGGAAGTATCACTACTCCGGCACGGCCTGTCCGGAGTTTCGGAAAGGGAATTGCAAGAAAGGGGATTCTTGTGACCTGGCCCATGGGATTTTCGAGTGTTGGCTCCATCCGGCTCGGTACCGGACTCAGCCCTGTAAGGACGGACTGGCCTGTCGCCGTCGTGTCTGTTTTTTCGCCCACACGCCGGAGCAGCTTCGGGTTCTGCCGCAGCAGAGCCCGAGAACGCCGGTTTCGGCCGATTCCGGTGATGGGTCCACTCGAATTTCGCTCGCATTCGATTCCTATTTTGCCAAAAAGTCATTCGTGACCTCACCCACTTCAATTCTATCAACGCCGCCAGTATCTCCGCCGTCTGATTCGCCTCCCATGTCGCCTAATTGCCCCCAACTCGGCGGCGGGTCATTTAATTCAATGAATGGGCTCGTTTTGTCTATGCGTAATCTTCAGATAGGGAAATCGAAAGCAACCCCTCAATGGGGGGTCCAATTGGGACAGAATTTGCGCTCTCCCTCCGGCTCTGGTTTGTACAGCTTACCGACGACTCCGACGACCGGAAATTACGAGTTATGGGGAAAGAATTACGAGGAAGAACCGGCAATGGAAAGAGTGGAATCTGGGAGAAACCTGAGAGCTAAAATGTATGCGAAACTCGGCAAAGACAACTCTGTGGAGCAGGTGGATTCGACATTGACACCCGATGTCGGATGGATCTCGGAGCTATTGATGTGA 1056 54.64 MMIGEQSRFNHTIQVPPWDPLEDHHMTGISSPVFLSGGVDSFIDSFSAIHPYLPSAADSDELDAAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLPQQSPRTPVSADSGDGSTRISLAFDSYFAKKSFVTSPTSILSTPPVSPPSDSPPMSPNCPQLGGGSFNSMNGLVLSMRNLQIGKSKATPQWGVQLGQNLRSPSGSGLYSLPTTPTTGNYELWGKNYEEEPAMERVESGRNLRAKMYAKLGKDNSVEQVDSTLTPDVGWISELLM 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44798174 44799229 - Maker00016689 Lcy9g1994 643110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1994 351 ProSiteProfiles Zinc finger C3H1-type profile. 114 140 IPR000571 GO:0046872(InterPro)
Lcy9g1994 351 PANTHER UNKEMPT FAMILY MEMBER 39 350 IPR045234 -
Lcy9g1994 351 MobiDBLite consensus disorder prediction 219 233 - -
Lcy9g1994 351 SMART c3hfinal6 148 171 IPR000571 GO:0046872(InterPro)
Lcy9g1994 351 SMART c3hfinal6 113 139 IPR000571 GO:0046872(InterPro)
Lcy9g1994 351 Gene3D - 108 181 - -
Lcy9g1994 351 MobiDBLite consensus disorder prediction 214 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0674 Lcy-Chr4:8149102 Lcy9g1994 Lcy-Chr9:44798174 1.76E-65 dispersed
Lcy4g2216 Lcy-Chr4:48809440 Lcy9g1994 Lcy-Chr9:44798174 1.09E-109 dispersed
Lcy7g0994 Lcy-Chr7:10389301 Lcy9g1994 Lcy-Chr9:44798174 1.86E-49 dispersed
Lcy8g1738 Lcy-Chr8:43860671 Lcy9g1994 Lcy-Chr9:44798174 3.62E-54 dispersed
Lcy6g0313 Lcy-Chr6:2946879 Lcy9g1994 Lcy-Chr9:44798174 5.24E-54 transposed
Lcy13g2165 Lcy-Chr13:40596457 Lcy9g1994 Lcy-Chr9:44798174 1.79E-101 wgd
Lcy2g0889 Lcy-Chr2:8141815 Lcy9g1994 Lcy-Chr9:44798174 4.25E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20704 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1994 - - - 0.0