Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1996 ATGGAGGAATATAATCATCTAAACGAGAACTCAAATCCGAGAGGAAATTTCTTGTACGCATCGCCAGTAGTTGGAGCGAATTCATCATCAGGAAATTTCGGAAGATCGAGCAATCAGACGGCTCAGATGGGAGTCAATACGTTTCATCTTCAACAAGGAACCGACTGTTTTCAAACCGACCAATCGCATCCGATTGTCAAGACTGAAGCCAGCACTTCGCACCATCAAGTTCTCAAATTTCACTACCCTTTAATGAGACCTGGAGGAGGAGGAGGAGGAGGAGCCCAGCCGCCGCCGACGACATGTCGGCCCGACGACAACGGCGTCGTCGATGTCGAAGCCATTAAGGCTAAAATCGTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCCGGAGAGGTCACAAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGAAGGATCGAATCTCAGCTCAGTTCTCTCTGCAACGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATCGGATCGTCCGAGGAGGAACAGGACAATAGCGGTGGAGAAACCGAACTACCGGAGATCGACCCGCGTGCTGAAGACAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTATCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGATGCAAGGCAGAAACTTCTCAATTGGTGGGAGTTACATTACAAGTGGCCATACCCTTCAGAGACAGAGAAGGTGGCATTGGCTGAATCCACTGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTCATGGATGGCCTTCATCCTCCCAATGCCGCGCTCTATATCGACGGTCACTACATGACCGATGGCCATTATCGACTCGGACCGTGA 1128 48.85 MEEYNHLNENSNPRGNFLYASPVVGANSSSGNFGRSSNQTAQMGVNTFHLQQGTDCFQTDQSHPIVKTEASTSHHQVLKFHYPLMRPGGGGGGGAQPPPTTCRPDDNGVVDVEAIKAKIVAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGEVTKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSSLCNGPVRIFNSDEKCEGIGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44828107 44832930 + Maker00016354 Lcy9g1996 643112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1996 375 Pfam KNOX1 domain 114 156 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1996 375 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677(InterPro)
Lcy9g1996 375 SUPERFAMILY Homeodomain-like 278 353 IPR009057 -
Lcy9g1996 375 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy9g1996 375 Pfam KNOX2 domain 168 214 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1996 375 CDD homeodomain 289 341 IPR001356 GO:0003677(InterPro)
Lcy9g1996 375 Pfam ELK domain 257 278 IPR005539 GO:0003677(InterPro)
Lcy9g1996 375 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy9g1996 375 FunFam Homeobox protein knotted-1-like 2 282 344 - -
Lcy9g1996 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 116 347 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy9g1996 375 MobiDBLite consensus disorder prediction 225 253 - -
Lcy9g1996 375 Gene3D - 282 344 - -
Lcy9g1996 375 SMART KNOX2_2 164 215 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g1996 375 SMART HOX_1 279 344 IPR001356 GO:0003677(InterPro)
Lcy9g1996 375 SMART ELK_2 257 278 IPR005539 GO:0003677(InterPro)
Lcy9g1996 375 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677(InterPro)
Lcy9g1996 375 SMART KNOX1_2 113 157 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0672 Lcy-Chr2:5747501 Lcy9g1996 Lcy-Chr9:44828107 1.84E-83 dispersed
Lcy4g0524 Lcy-Chr4:6300644 Lcy9g1996 Lcy-Chr9:44828107 1.61E-87 dispersed
Lcy4g1782 Lcy-Chr4:43900393 Lcy9g1996 Lcy-Chr9:44828107 6.70E-77 dispersed
Lcy7g0162 Lcy-Chr7:1454864 Lcy9g1996 Lcy-Chr9:44828107 6.99E-77 dispersed
Lcy9g1867 Lcy-Chr9:43706358 Lcy9g1996 Lcy-Chr9:44828107 2.47E-30 dispersed
Lcy9g1869 Lcy-Chr9:43718880 Lcy9g1996 Lcy-Chr9:44828107 9.76E-24 dispersed
Lcy13g2164 Lcy-Chr13:40572241 Lcy9g1996 Lcy-Chr9:44828107 6.23E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20705 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1996 - - - 0.0