Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1997 ATGGATGGCCAGGGGCTTCTTCTCGGGCTGGGGCGGGGGTCGGATGATCCAGTGCGGTCACTCGTACCGGAAGTTGCCGGCGTGAAGAAGAAGCTGCAGGTTTTGAAGTTCGATGACATTTTGCCTTCTTTGACGCTCGGGTTGTCGATTGTTGTCGAGAAGAGCGGCGGCGAATCCGCTGTCGCCGCCGAGGAGTTGATCCAGCAGGGTTCTTCGGGAAGTCCGGTGTCGTCGTTTTCGAATTCTTCGGGGTTTAAGAGGGAGAGAGACGGGTGGGGCGGCGGTGGCGGTGAAGAGAAGGAGGCGGAGGCGGAGGCGGAGGTGTACATGGAGAGAGTGGGTATGAAGGTTGGTGAGGAAGATGAAGATGGAAGTCCGAGGAAGAAACTGAGACTTACTAAAGAACAATCCGCCATTTTAGAAGATAACTTCAAAGAACATTCAAGTCTCAGTCCTAAGCAAAAGCAGGATTTGGCTAGACAGTTGAACCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACCGAAATGGACTGTGAATTACTGAAAAAATGCTGCGAAAAGCTCAAAGAAGAGAACACAAGGCTTCAAAAGGAGCTTCAAGAGCTCAAATCTCTCAAACTAACGCCTCCACCGTTCTGTATGCAGCTTCAAGCCGCCACCCTCACCGTCTGCCCTTCCTGTGAGAGGTCCATTTGCGGCGGCGGTGGCGGCGGCGACGCGTCTCCGGCCACCTCCTTCTCGATTGGGCCAAAGCCTCATTTTCTCAAATTCCCCTTTAACCATCCGTCGGCGGCTTGTTAG 834 53.0 MDGQGLLLGLGRGSDDPVRSLVPEVAGVKKKLQVLKFDDILPSLTLGLSIVVEKSGGESAVAAEELIQQGSSGSPVSSFSNSSGFKRERDGWGGGGGEEKEAEAEAEVYMERVGMKVGEEDEDGSPRKKLRLTKEQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTPPPFCMQLQAATLTVCPSCERSICGGGGGGDASPATSFSIGPKPHFLKFPFNHPSAAC 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44836583 44839418 - Maker00016177 Lcy9g1997 643113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1997 277 Coils Coil 182 219 - -
Lcy9g1997 277 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy9g1997 277 FunFam Homeobox-leucine zipper protein 18 114 188 - -
Lcy9g1997 277 Pfam Homeobox associated leucine zipper 183 216 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g1997 277 Gene3D - 118 188 - -
Lcy9g1997 277 SUPERFAMILY Homeodomain-like 124 191 IPR009057 -
Lcy9g1997 277 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677(InterPro)
Lcy9g1997 277 SMART halz 183 226 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g1997 277 SMART HOX_1 125 187 IPR001356 GO:0003677(InterPro)
Lcy9g1997 277 MobiDBLite consensus disorder prediction 67 102 - -
Lcy9g1997 277 Pfam Homeodomain 127 181 IPR001356 GO:0003677(InterPro)
Lcy9g1997 277 MobiDBLite consensus disorder prediction 67 85 - -
Lcy9g1997 277 CDD homeodomain 126 184 IPR001356 GO:0003677(InterPro)
Lcy9g1997 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 71 241 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1074 Lcy-Chr6:11853768 Lcy9g1997 Lcy-Chr9:44836583 1.86E-69 dispersed
Lcy6g2126 Lcy-Chr6:45004693 Lcy9g1997 Lcy-Chr9:44836583 8.39E-48 dispersed
Lcy7g1255 Lcy-Chr7:15894273 Lcy9g1997 Lcy-Chr9:44836583 1.00E-16 dispersed
Lcy9g1711 Lcy-Chr9:42333532 Lcy9g1997 Lcy-Chr9:44836583 5.69E-10 dispersed
Lcy9g1997 Lcy-Chr9:44836583 Lcy4g1025 Lcy-Chr4:18392494 2.13E-06 dispersed
Lcy1g0879 Lcy-Chr1:7567121 Lcy9g1997 Lcy-Chr9:44836583 7.93E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20706 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1997 K09338 - csv:101212868 332.798