Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2003 ATGGCGCCCTCGTTTGATTGGTGGGGAAAAGACACTCACAGAGGAACTCCTGTTGTTGTCAAGATGGAGAATCCGAATTGGTCGATGGTTGAGCTCGAGGGTCCATCGGAGGATGATTTTCTCATCGCCGGCGAGTCGCCGTCGGGTCGGACCAGAGAGAAAGGCCGAGGCAAAAACGCTAAGCAACTCACGTGGGTTCTCCTCCTCAAGGCCCACAAGGCCGCCGGTTGTTTAACTTCCATTGGCTCTGCAATGGTGGACTTGGCCGCCGCCGTCAGACGCCGTGTTGCTTCTGGCCGGACTGACGCCGACGACGCCGACAATGACGTCCCTGTCGGAGGCAGAGAGAAAGAGAACCCCACTGTGAAAACGAGGTTCTATTCTTGTATCAAAGTGTTTCTATGGCTGTCGGTGCTTCTGTTGGGTTTTGAGGTTGCGGCCTTCTTCAAAGGCTGGCATTTCGGTACTCCAAAGCTTCAATTGGATTATCTCTGGGCATCGCAGTGGGGTTTTAAAGGAGTTTTTGATTGGATTTACTCTCAGTGGGTATTGATTCGAGTGGACTATTTAGCTCCTCCTCTTCAGTTCTTAGCCAATGCCTGTATCATTCTGTTCCTTATTCAGAGCTTGGATCGTTTAGTCTTGTGTTTGGGTTGTTTCTGGATCCGATTCAAGAAAATCAAGCCGGTTCTTAAACCTGGAGACGAAGACCTTGAATCTGGCGAGAAGGGCTATTTCCCAATGGTTCTTGTTCAGATCCCCATGTGCAACGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTATCTGCAACTTGGACTGGCCAAGAACCAAGCTGCTAATTCAAGTTCTTGATGATTCTGATGATCCGACTACACAGTTGCTGATTAAAGAGGAGGTTCATAAATGGCAGCAAGAGGGTGCCAGCATTGTTTATCGTCATAGGGTCATTAGAGATGGTTATAAGGCTGGCAATCTCAAATCGGCCATGAATTGTAGCTATGTTAAAGATTATGAATTCGTCGCCATCTTTGACGCTGATTTTCAACCCACACCTGATTTCCTTAAAAGAACTGTTCCTCATTTCAAGGACAATGAAGAGTTGGGACTGGTTCAAGCAAGGTGGTCTTTTGTGAACAGGGATGAGAATTTACTAACCAGGCTGCAGAACATCAATTTAGCTTTCCATTTTGAAGTAGAGCAGCAAGTGAACAGTGTCTTCCTCAACTTCTTTGGATTCAATGGTACTGCTGGTGTGTGGAGGATCAAAGCTCTAGAGGACGCCGGTGGGTGGTTGGAAAGGACCACCGTCGAGGACATGGATATCGCTGTCCGTGCTCATCTTCATGGTTGGAAATTCATATTCCTAAATGATGTTGAGTGCCAATGTGAGCTACCAGAATCTTATGAAGCTTATAGAAAACAACAACATAGATGGCATTCTGGACCAATGCAATTGTTTCGCCTTTGTCTGCCTGCTATTATTCGATCAAAGATTAGTGTATGGAAGAAGTTCAACTTGATCTTCCTCTTCTTTTTGCTCAGAAAATTGATACTTCCCTTCTATTCCTTCACACTTTTTTGCATAATTCTCCCAATGACAATGTTTGTTCCCGAGGCCGAGCTACCCGCTTGGGTCGTTTGCTATATCCCGGCCACCATGTCATTTCTAAACATCCTGCCTGCCCCAAAAGCCTTCCCTTTCATTGTCCCTTACCTCCTCTTCGAGAACACTATGTCAGTCACCAAGTTCAATGCCATGATCTCAGGCCTCTTCCAGCTTGGTAGTGCCTACGAATGGGTTGTTACAAAGAAATCTGGTCGTTCCTCCGAGGGCGATCTCGTCTCCTTGGTAGAGAGAGAGCAAAAGCATCAAAGAGGGGCTTCGGCGCCCGACCTCGAAGAGATGAAGGAAGAAATTCAGAAGCAAGAACAGAAAGCTTCTTTGCGAAAGAAGCACAACCGAATATACACGAAAGAGCTCGCATTGGCTTTCCTCCTCCTAACGGCATCGGCACGGAGCCTTCTGTCTGCACAAGGGATCCATTTCTACTTCTTGCTGTTCCAGGGGATCTCGTTCCTGCTGGTCGGTTTGGACTTGATCGGCGAACAGATAGGTTGA 2121 47.1 MAPSFDWWGKDTHRGTPVVVKMENPNWSMVELEGPSEDDFLIAGESPSGRTREKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSAMVDLAAAVRRRVASGRTDADDADNDVPVGGREKENPTVKTRFYSCIKVFLWLSVLLLGFEVAAFFKGWHFGTPKLQLDYLWASQWGFKGVFDWIYSQWVLIRVDYLAPPLQFLANACIILFLIQSLDRLVLCLGCFWIRFKKIKPVLKPGDEDLESGEKGYFPMVLVQIPMCNEKEVYQQSIAAICNLDWPRTKLLIQVLDDSDDPTTQLLIKEEVHKWQQEGASIVYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKDNEELGLVQARWSFVNRDENLLTRLQNINLAFHFEVEQQVNSVFLNFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIRSKISVWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKAFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEREQKHQRGASAPDLEEMKEEIQKQEQKASLRKKHNRIYTKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQIG 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44915253 44919298 + Maker00017020 Lcy9g2003 643119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2003 706 Coils Coil 633 653 - -
Lcy9g2003 706 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 176 704 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Lcy9g2003 706 FunFam probable xyloglucan glycosyltransferase 5 240 465 - -
Lcy9g2003 706 SUPERFAMILY Nucleotide-diphospho-sugar transferases 249 526 IPR029044 -
Lcy9g2003 706 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 239 464 IPR029044 -
Lcy9g2003 706 Pfam Glycosyl transferase family group 2 341 547 IPR001173 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0365 Lcy-Chr5:3678642 Lcy9g2003 Lcy-Chr9:44915253 8.04E-130 dispersed
Lcy8g1966 Lcy-Chr8:45925236 Lcy9g2003 Lcy-Chr9:44915253 3.62E-135 dispersed
Lcy10g1947 Lcy-Chr10:43518590 Lcy9g2003 Lcy-Chr9:44915253 7.67E-306 transposed
Lcy3g1331 Lcy-Chr3:39607694 Lcy9g2003 Lcy-Chr9:44915253 2.72E-48 transposed
Lcy9g1762 Lcy-Chr9:42822519 Lcy9g2003 Lcy-Chr9:44915253 0 transposed
Lcy13g2156 Lcy-Chr13:40481904 Lcy9g2003 Lcy-Chr9:44915253 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2003 - - - 0.0