Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2004 ATGGGTGATCTCGAAAATGACGAAATGGGTTTTAGAAATTCGAATGAGGGGTTACTGAATTGTCCATCTTCGGATAAACTTTCGGGAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCAATGGTCTCCTCTCATGGCGAATTTTCAAATTCGTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGCACAACGCAAACTGTTCAATATCCGACAGATTTGGAGATGGGGACGAAGCTGCCATGTTTTGGGAGTGGGAATTATTCCGACATGTTTGGTTCTTTTGGTCTTGCTGGTCAGATTCTTGGAGGGTGTTCTTCAAATTACAGAAATGGAGGATCGACCAACACTGCTCAAACATCACAAGAAAATTTACCACCATCTGGTGAAGAAGCTGGTTTAGGATCGCCAAGTGGTAAAATCAGAAAACGAGCCCTTGATTCCACTTTCCCATTTAGCCCAAATAAGAAATCTGAAGGGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAGAATTTACGAGGAAAAGCAACTGGAAAACAAACAAAAGAGAAGTCTAATAACAGTGGTGAAGCTCCAAAGGAAAATTACATTCATGTGCGAGCTAGAAGAGGGCAGGCCACAAATAGCCATAGCCTTGCTGAGCGGGTGAGGAGGGAGAAGATTAGTGAGAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAACGTCGATATCGAGAGGATTTTATCCAAAGATATTTTCCACACACGGGGTGGCAATGGAACTGTACTTGGATTTGATCCCGGGTTGAGCGCCGTTCCCCCGGTCCCTCCTCATCGAATGTTTCAGTTTCAGGGGACGATGTCGAATATGCCAACCACATCCACACAGTTTCCTCCTCTGCCTCAGACTATGTTAGACAGCGATCTCCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCATAGACAATTTGGGACCAAATGGTAATCTTCATAATCCAACAGCTTTGTATTCTAAAGTTCCAAGTTAA 1224 43.95 MGDLENDEMGFRNSNEGLLNCPSSDKLSGTMAMGSFFGSGWDPLVSLGQSENFGAASMVSSHGEFSNSFPVVLENHGGSGTTQTVQYPTDLEMGTKLPCFGSGNYSDMFGSFGLAGQILGGCSSNYRNGGSTNTAQTSQENLPPSGEEAGLGSPSGKIRKRALDSTFPFSPNKKSEGKLKKDVSGDSSSTQEEKNAEMEQNLRGKATGKQTKEKSNNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFHTRGGNGTVLGFDPGLSAVPPVPPHRMFQFQGTMSNMPTTSTQFPPLPQTMLDSDLQSLLQMGFDSGSAIDNLGPNGNLHNPTALYSKVPS 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44925824 44928850 - Maker00016264 Lcy9g2004 643120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2004 407 MobiDBLite consensus disorder prediction 174 210 - -
Lcy9g2004 407 MobiDBLite consensus disorder prediction 130 144 - -
Lcy9g2004 407 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 129 369 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy9g2004 407 SMART finulus 241 291 IPR011598 GO:0046983(InterPro)
Lcy9g2004 407 CDD bHLH_AtBPE_like 225 310 - -
Lcy9g2004 407 MobiDBLite consensus disorder prediction 130 226 - -
Lcy9g2004 407 Gene3D - 232 305 IPR036638 GO:0046983(InterPro)
Lcy9g2004 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 285 IPR011598 GO:0046983(InterPro)
Lcy9g2004 407 MobiDBLite consensus disorder prediction 388 407 - -
Lcy9g2004 407 FunFam Basic helix-loop-helix transcription factor 232 304 - -
Lcy9g2004 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 300 IPR036638 GO:0046983(InterPro)
Lcy9g2004 407 Pfam Helix-loop-helix DNA-binding domain 238 286 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2025 Lcy-Chr4:46783341 Lcy9g2004 Lcy-Chr9:44925824 2.26E-17 dispersed
Lcy5g2095 Lcy-Chr5:44017037 Lcy9g2004 Lcy-Chr9:44925824 6.01E-37 dispersed
Lcy5g2422 Lcy-Chr5:46990924 Lcy9g2004 Lcy-Chr9:44925824 8.25E-31 dispersed
Lcy8g1118 Lcy-Chr8:37412607 Lcy9g2004 Lcy-Chr9:44925824 1.18E-38 dispersed
Lcy8g2110 Lcy-Chr8:47286763 Lcy9g2004 Lcy-Chr9:44925824 2.39E-11 dispersed
Lcy9g0066 Lcy-Chr9:1309758 Lcy9g2004 Lcy-Chr9:44925824 2.10E-11 dispersed
Lcy9g2004 Lcy-Chr9:44925824 Lcy9g2042 Lcy-Chr9:45292387 4.71E-09 dispersed
Lcy7g0378 Lcy-Chr7:3190844 Lcy9g2004 Lcy-Chr9:44925824 2.89E-52 transposed
Lcy13g2130 Lcy-Chr13:40209447 Lcy9g2004 Lcy-Chr9:44925824 2.23E-08 wgd
Lcy13g2155 Lcy-Chr13:40466769 Lcy9g2004 Lcy-Chr9:44925824 1.38E-54 wgd
Lcy3g2191 Lcy-Chr3:48815160 Lcy9g2004 Lcy-Chr9:44925824 6.99E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20708 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2004 - - - 0.0