Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2006 ATGACTATGGAAGTTACTTCCGAGTCTCAGCAACATTCTCACTACCACAACCAAAGCCAGGCAACTTCAGTAGCTGCTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCAGCACTATAATGGCGATTTGCTTTCTCCCTTGTCTGTAATGCCACTCAAGTCAGATGGGTCTCTTTGTATCATGGAGTCAATCAGCACATCACAACCTCAAGAAATATTGCCAAATCTCTCACCAAAGCTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGGGAGGCCACTGCTTTAAGCTTGGACAGCATATATTACAATCAAAATGCTGAGGCTGACTCAGACAGACAACACTCTTTGAACCTTTTTAAGCAACAAGAGCAACAGCATATTCTTTTTCAATCTCAGCGATACTATTCTGGAATGTACCAGTTTTCAGCTGAGGATGCCAACAAGGAAGCTCATTTTGCAAGCTATTGTTCTGATATTCGCCTAGCTATGGAGCAGCGCATCAATGGCTGCTATGGAGGGATGAATTGCCAAGACTTGCAGCCACTTAGTTTGTCAATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTAATCCAAGTCAAATTTCTCAATCTGTACCAGCCACCATAGAAACAAAGAAAAGGGGTCTGCCCGGTCATAAGCAGCCGGTCCATCGGAAGTCGATCGACACGTTTGGACAAAGAACTTCGCAGTACAGAGGTGTTACGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGCTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACATTTAAACTTCCCGTTAAAGAACTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATACGTTGCGCACCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGAAGAGTCGCCGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCAGCTGAAGCATATGATATAGCAGCCATCAAATTCCGTGGCGTAAACGCCGTTACGAACTTCGACACTTCAAGGTACAATGTAGAGAGGATCATGGCGAGTAGCAGCCTCCTTTCAGGAGAGTTTGCAAGACGAAACAAAGAGCACAAACCAACCAATGCCACCGAGCACAAAGAACCAAACCAGAACATCGCTCAAATTGACCCCTCGGAGATATCCAACAACAACAACTTAGATTGGAGGACAGTATTCCACGACAACCCACTGCTGGATCCAAACGCAACCGTCGAATCCATAGACCAAAAGTCCATGACTTCCAGCAGTTACCTGAACCATCTGATTGGAGTCGAAACCGTAAGTTGCAATCACGCAATGGCGAACGATTCAAGCAAGTTCAAGGCACATTTCTCCAATGCTTCCTCTGTGGTGAGCAGCTTGAGCAGCTCAAGGGAAACAAGTCCTGATAAGTCAAATGCCTCATCCTCAGTGTTGCTTGCAAAAGCCCCATACGGAAGCAGCAATGGAGGCATTTGGGTGCCATCAACTCAACAAATGAGGCCAGCTCCCATTTCTTTGCCTGTTGTGTCAACTGTTTGGAATGATGTCTGA 1734 45.56 MTMEVTSESQQHSHYHNQSQATSVAAVSNTMSNSFLASQHYNGDLLSPLSVMPLKSDGSLCIMESISTSQPQEILPNLSPKLEDFLGGATHGREATALSLDSIYYNQNAEADSDRQHSLNLFKQQEQQHILFQSQRYYSGMYQFSAEDANKEAHFASYCSDIRLAMEQRINGCYGGMNCQDLQPLSLSMSPGSQSSCVTNPSQISQSVPATIETKKRGLPGHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAVTNFDTSRYNVERIMASSSLLSGEFARRNKEHKPTNATEHKEPNQNIAQIDPSEISNNNNLDWRTVFHDNPLLDPNATVESIDQKSMTSSSYLNHLIGVETVSCNHAMANDSSKFKAHFSNASSVVSSLSSSRETSPDKSNASSSVLLAKAPYGSSNGGIWVPSTQQMRPAPISLPVVSTVWNDV 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44947296 44950736 - Maker00016359 Lcy9g2006 643122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2006 577 SMART rav1_2 339 403 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 SMART rav1_2 240 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 Pfam AP2 domain 240 295 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 Pfam AP2 domain 340 389 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 FunFam AP2-like ethylene-responsive transcription factor 338 399 - -
Lcy9g2006 577 CDD AP2 239 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 SUPERFAMILY DNA-binding domain 239 304 IPR016177 GO:0003677(InterPro)
Lcy9g2006 577 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 SUPERFAMILY DNA-binding domain 338 398 IPR016177 GO:0003677(InterPro)
Lcy9g2006 577 CDD AP2 338 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 ProSiteProfiles AP2/ERF domain profile. 240 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 MobiDBLite consensus disorder prediction 1 22 - -
Lcy9g2006 577 Gene3D AP2/ERF domain 239 305 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2006 577 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 475 - -
Lcy9g2006 577 FunFam AP2-like ethylene-responsive transcription factor ANT 239 305 - -
Lcy9g2006 577 MobiDBLite consensus disorder prediction 418 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0538 Lcy-Chr7:4770610 Lcy9g2006 Lcy-Chr9:44947296 2.71E-74 dispersed
Lcy8g1865 Lcy-Chr8:44963989 Lcy9g2006 Lcy-Chr9:44947296 3.36E-38 dispersed
Lcy8g2105 Lcy-Chr8:47235768 Lcy9g2006 Lcy-Chr9:44947296 3.50E-98 dispersed
Lcy9g2006 Lcy-Chr9:44947296 Lcy6g0527 Lcy-Chr6:4937437 5.97E-08 dispersed
Lcy13g0109 Lcy-Chr13:1031891 Lcy9g2006 Lcy-Chr9:44947296 8.19E-117 transposed
Lcy3g1345 Lcy-Chr3:39889414 Lcy9g2006 Lcy-Chr9:44947296 2.18E-07 transposed
Lcy1g0889 Lcy-Chr1:7703336 Lcy9g2006 Lcy-Chr9:44947296 4.73E-102 wgd
Lcy13g2154 Lcy-Chr13:40451160 Lcy9g2006 Lcy-Chr9:44947296 2.84E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20709 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2006 K09285 - csv:101212143 894.804