Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2006 | ATGACTATGGAAGTTACTTCCGAGTCTCAGCAACATTCTCACTACCACAACCAAAGCCAGGCAACTTCAGTAGCTGCTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCAGCACTATAATGGCGATTTGCTTTCTCCCTTGTCTGTAATGCCACTCAAGTCAGATGGGTCTCTTTGTATCATGGAGTCAATCAGCACATCACAACCTCAAGAAATATTGCCAAATCTCTCACCAAAGCTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGGGAGGCCACTGCTTTAAGCTTGGACAGCATATATTACAATCAAAATGCTGAGGCTGACTCAGACAGACAACACTCTTTGAACCTTTTTAAGCAACAAGAGCAACAGCATATTCTTTTTCAATCTCAGCGATACTATTCTGGAATGTACCAGTTTTCAGCTGAGGATGCCAACAAGGAAGCTCATTTTGCAAGCTATTGTTCTGATATTCGCCTAGCTATGGAGCAGCGCATCAATGGCTGCTATGGAGGGATGAATTGCCAAGACTTGCAGCCACTTAGTTTGTCAATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTAATCCAAGTCAAATTTCTCAATCTGTACCAGCCACCATAGAAACAAAGAAAAGGGGTCTGCCCGGTCATAAGCAGCCGGTCCATCGGAAGTCGATCGACACGTTTGGACAAAGAACTTCGCAGTACAGAGGTGTTACGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGCTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACATTTAAACTTCCCGTTAAAGAACTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATACGTTGCGCACCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGAAGAGTCGCCGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCAGCTGAAGCATATGATATAGCAGCCATCAAATTCCGTGGCGTAAACGCCGTTACGAACTTCGACACTTCAAGGTACAATGTAGAGAGGATCATGGCGAGTAGCAGCCTCCTTTCAGGAGAGTTTGCAAGACGAAACAAAGAGCACAAACCAACCAATGCCACCGAGCACAAAGAACCAAACCAGAACATCGCTCAAATTGACCCCTCGGAGATATCCAACAACAACAACTTAGATTGGAGGACAGTATTCCACGACAACCCACTGCTGGATCCAAACGCAACCGTCGAATCCATAGACCAAAAGTCCATGACTTCCAGCAGTTACCTGAACCATCTGATTGGAGTCGAAACCGTAAGTTGCAATCACGCAATGGCGAACGATTCAAGCAAGTTCAAGGCACATTTCTCCAATGCTTCCTCTGTGGTGAGCAGCTTGAGCAGCTCAAGGGAAACAAGTCCTGATAAGTCAAATGCCTCATCCTCAGTGTTGCTTGCAAAAGCCCCATACGGAAGCAGCAATGGAGGCATTTGGGTGCCATCAACTCAACAAATGAGGCCAGCTCCCATTTCTTTGCCTGTTGTGTCAACTGTTTGGAATGATGTCTGA | 1734 | 45.56 | MTMEVTSESQQHSHYHNQSQATSVAAVSNTMSNSFLASQHYNGDLLSPLSVMPLKSDGSLCIMESISTSQPQEILPNLSPKLEDFLGGATHGREATALSLDSIYYNQNAEADSDRQHSLNLFKQQEQQHILFQSQRYYSGMYQFSAEDANKEAHFASYCSDIRLAMEQRINGCYGGMNCQDLQPLSLSMSPGSQSSCVTNPSQISQSVPATIETKKRGLPGHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAVTNFDTSRYNVERIMASSSLLSGEFARRNKEHKPTNATEHKEPNQNIAQIDPSEISNNNNLDWRTVFHDNPLLDPNATVESIDQKSMTSSSYLNHLIGVETVSCNHAMANDSSKFKAHFSNASSVVSSLSSSRETSPDKSNASSSVLLAKAPYGSSNGGIWVPSTQQMRPAPISLPVVSTVWNDV | 577 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 44947296 | 44950736 | - | Maker00016359 | Lcy9g2006 | 643122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2006 | 577 | SMART | rav1_2 | 339 | 403 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | SMART | rav1_2 | 240 | 309 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | Pfam | AP2 domain | 240 | 295 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | Pfam | AP2 domain | 340 | 389 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | FunFam | AP2-like ethylene-responsive transcription factor | 338 | 399 | - | - | |
Lcy9g2006 | 577 | CDD | AP2 | 239 | 303 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | SUPERFAMILY | DNA-binding domain | 239 | 304 | IPR016177 | GO:0003677(InterPro) | |
Lcy9g2006 | 577 | ProSiteProfiles | AP2/ERF domain profile. | 339 | 397 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | SUPERFAMILY | DNA-binding domain | 338 | 398 | IPR016177 | GO:0003677(InterPro) | |
Lcy9g2006 | 577 | CDD | AP2 | 338 | 399 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | ProSiteProfiles | AP2/ERF domain profile. | 240 | 303 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | PRINTS | Ethylene responsive element binding protein signature | 379 | 399 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | PRINTS | Ethylene responsive element binding protein signature | 241 | 252 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lcy9g2006 | 577 | Gene3D | AP2/ERF domain | 239 | 305 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | Gene3D | AP2/ERF domain | 339 | 399 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2006 | 577 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 118 | 475 | - | - | |
Lcy9g2006 | 577 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 239 | 305 | - | - | |
Lcy9g2006 | 577 | MobiDBLite | consensus disorder prediction | 418 | 437 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy7g0538 | Lcy-Chr7:4770610 | Lcy9g2006 | Lcy-Chr9:44947296 | 2.71E-74 | dispersed | |
Lcy8g1865 | Lcy-Chr8:44963989 | Lcy9g2006 | Lcy-Chr9:44947296 | 3.36E-38 | dispersed | |
Lcy8g2105 | Lcy-Chr8:47235768 | Lcy9g2006 | Lcy-Chr9:44947296 | 3.50E-98 | dispersed | |
Lcy9g2006 | Lcy-Chr9:44947296 | Lcy6g0527 | Lcy-Chr6:4937437 | 5.97E-08 | dispersed | |
Lcy13g0109 | Lcy-Chr13:1031891 | Lcy9g2006 | Lcy-Chr9:44947296 | 8.19E-117 | transposed | |
Lcy3g1345 | Lcy-Chr3:39889414 | Lcy9g2006 | Lcy-Chr9:44947296 | 2.18E-07 | transposed | |
Lcy1g0889 | Lcy-Chr1:7703336 | Lcy9g2006 | Lcy-Chr9:44947296 | 4.73E-102 | wgd | |
Lcy13g2154 | Lcy-Chr13:40451160 | Lcy9g2006 | Lcy-Chr9:44947296 | 2.84E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20709 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g2006 | K09285 | - | csv:101212143 | 894.804 |