Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2015 ATGCCGATGTACCAGCCTTCCGGTCGGAGAAGAGAGGCCGATTCGGAGCTGGGTGTGGGTTTGGGCGGTGGTGGTGGGCAAGTTCTTGATGTCGAAACCGCCGTGAAAGATGGTATTCTTGGCGGCGGTGGTGGGTTAATCTGCGACGGTGGAGGGGTTGAGAAATTGGATCTGAAGGAGATGGTGGAGGAACTTGAGAACATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCCAATATCCGCAAATGGTTTTCTCTTGGCCATTTCACTTGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTTCGCAGAAGTATTTGGCGATGAAGAAGAGGTCTGAGGACGTGCAGGGGAGAGCTCTTGAGCTCTTAGACACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGAGCTTCGGCAAGTTGTGGCTTCGAATTCTTCGGCAAAGAAGACTGTGGAAGACAATGGCGGTCTTGCCCTGATTTCGTCGTTGTTGGGTCCTTTTACTTCCCATGCGGTTGGCTCTGAAGCCATTGGGATTTTGGTGAATTTGGATCTTGATGGCGAGTCGAGGAGGAACCTTGTTCAACCTGCGAAGATTTCGTTAATGGTGGATATGTTGAATGAGGGATCATCAGAGACCAAAATCAACTGCACTGGATTGATTGAAACTTTGCTGGAAGGGGACAACTGTGGAGTGGAAACTGTCTCGAGTTTAAGTCTCTTGGTTGGATTGTTAAGATTAATCAAGGAAAAGAAGCACCCAAATGGAGTTCTTGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACCAGTAAGGAACTCAGTAGTGAGCATTGGGGCAATCCCACAGTTGATCGAAATTCTCCCGAATTTCGACCCAGATTGTTTGGAACTAGCCCTTCATGTATTGGACTCACTCACATCCCTCTCGGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAACACCATTCCAAACTTGGTCAAGTTGTTGCTGAGAGTCTCAGAGAGCTGCACTCAGCTGGCTTTATCAATCTTATGGGCAGTTTGTAAACTCGCCCCTGAAGAATGTGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCTAAGCTTCTTTTGATTCAGTGCGGTTGCAATCCCAATCTGAAACAGCGCTCCGCCGAGCTCCTGAAGCTCTGCAGCTTAAACTACACAGCAACCCTCTTCATTTCCAAGTGTAAGCTTACAAGGACAATACAATAA 1362 47.94 MPMYQPSGRRREADSELGVGLGGGGGQVLDVETAVKDGILGGGGGLICDGGGVEKLDLKEMVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNIRKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRQVVASNSSAKKTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLDLDGESRRNLVQPAKISLMVDMLNEGSSETKINCTGLIETLLEGDNCGVETVSSLSLLVGLLRLIKEKKHPNGVLAGLRLLKALCSQEPVRNSVVSIGAIPQLIEILPNFDPDCLELALHVLDSLTSLSEGRVALKDCPNTIPNLVKLLLRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLIQCGCNPNLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45011089 45012450 - Maker00016232 Lcy9g2015 643131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2015 453 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy9g2015 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 152 IPR013083 -
Lcy9g2015 453 Pfam U-box domain 70 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy9g2015 453 CDD RING-Ubox_PUB 71 121 IPR045210 -
Lcy9g2015 453 SUPERFAMILY ARM repeat 144 436 IPR016024 -
Lcy9g2015 453 Gene3D - 153 432 IPR011989 -
Lcy9g2015 453 SMART Ubox_2 73 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy9g2015 453 PANTHER WDSAM1 PROTEIN 66 448 IPR045185 GO:0061630(InterPro)
Lcy9g2015 453 SUPERFAMILY RING/U-box 64 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1017 Lcy-Chr5:19269212 Lcy9g2015 Lcy-Chr9:45011089 5.17E-22 dispersed
Lcy8g0142 Lcy-Chr8:3519511 Lcy9g2015 Lcy-Chr9:45011089 2.12E-27 dispersed
Lcy8g2021 Lcy-Chr8:46440291 Lcy9g2015 Lcy-Chr9:45011089 1.24E-21 dispersed
Lcy9g2015 Lcy-Chr9:45011089 Lcy5g2232 Lcy-Chr5:45328806 1.76E-17 dispersed
Lcy13g2147 Lcy-Chr13:40360378 Lcy9g2015 Lcy-Chr9:45011089 1.50E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2015 - - - 0.0