Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2019 ATGAGGTGTCGCGTAGGTCAAACCTACGCGACATGTAAGGTCGCGTCTGTTGTAGAGACACGACCTCCGCAACCAGACGGCAACGAGATCGAACGAGACGGCAATGAGAAGGAATCGGCTTTCGGCATTGGGTCGCGTAGGTTGAAGAGACGCGACTTCGATGTCACATCAGCAAATGAGATTGAAGAACATTTTGTCTTAATTTCTCCGATGGCCACTTCTCCCTTCACTTGCTATGTTTTGTTGGTTGTTGTTTCTCCGACGTTCTTTGCCGCCGCAGATTCATCTTGGAATGTGAAGTATTTGCCTGGATTTTCAGGTTCTCTTCCATTCCAGCTCGAAACTGGATACGTGGGTGTGGGAGATTCGGACGAAGTTCAGTTGTTTTATTACTTTGTGAAATCTCAAGGAAATCCCAAAACGGATCCTTTAATGACATGGTACACTGGAGGTCCTGGTTGCTCTTCCCTCACCGGATTTCTCTTTGAAATTGGTCCGGTAGGTTTCAAGGTAGAGCCATACAATGGAAGCCTACCTCAACTAATCTTGAATCCTTATACATGGACCAAGAAAGCAAATATACTATTTATCGATACGCCCGTTGATAGTGGATTTTCATATGGTCGAACTGTACGAGGTTCTATGAAAGGAGATTATCTACAAGTTGAACAAAATCATCAATTTTTGAGAAAGTGGCTGGCCGATCATCCAGAATTTATATCTAATCCGTTTTATGTTGGTGGAGACTCATACACGGGTATTATTATTCCACCTCTTACTCAGGCTATTTCAGAGGGAAATAAACATGCTTCCCCAGTTATAAACCTTCAGGGATACATAGAAGGAAGTCCTGTCACTATACGTAATTCAAATGAAAATTTTAGGATTCCTTTTGCTCATGGCATGTCCCTCATCTCTAGTGAATTGTATGAGTCATTGACAACTAGTTGCAAAGGAGAATATCAGATTAAGAACATCGCTCCTAATAATTTGGAGTGCAAGAAACATGTAGAAACGTTTGAACAGCTTGTGAGCCAAATCAATTATATGTGTATTTCGTGGCCTTATTGTGAAGACGTTTCTTCAGCGCCACAAACATTTGGTGGGCGGAGATCTCTTTACAACACCTCCCAAGTGCTTCTTGCTCCTAAAGTGTTACCTCCTCCTTCTTTTGATTGTCAAGAGTATAGATATTTCCTTGGTTATTATTGGGCCAACGACAATCGAGTTCGGAAAGCACTTCATATACGTGAGGGAACTACTGGAGAATGGGTAAGATGTCAAGACCGTAATGGTTACAACTTTGACATTATGAATTCTGTCCCTTATCATGCAAACCTTAGTACTAAAGGTTATCGGTCTTTGATTTTTAGCGGAGATCATGATATGAATGTGCCAAGTACGGATACTGAAGCATGGATCAAATCTCTTAATTATTCCATTGTCGATGATTGGAGGCCTTGGTTTAACATGGACAATCAAGTAGTCGGATACACAAGAACATATGCAAATAACATGACATTTGCAACAATAAAAGGTGGAGGGCACACACCTGAATACATGCAATACCAAAGTGGATTATTATTTGATAGATGGATAGCGGGAGAATCTTTATAA 1617 41.19 MRCRVGQTYATCKVASVVETRPPQPDGNEIERDGNEKESAFGIGSRRLKRRDFDVTSANEIEEHFVLISPMATSPFTCYVLLVVVSPTFFAAADSSWNVKYLPGFSGSLPFQLETGYVGVGDSDEVQLFYYFVKSQGNPKTDPLMTWYTGGPGCSSLTGFLFEIGPVGFKVEPYNGSLPQLILNPYTWTKKANILFIDTPVDSGFSYGRTVRGSMKGDYLQVEQNHQFLRKWLADHPEFISNPFYVGGDSYTGIIIPPLTQAISEGNKHASPVINLQGYIEGSPVTIRNSNENFRIPFAHGMSLISSELYESLTTSCKGEYQIKNIAPNNLECKKHVETFEQLVSQINYMCISWPYCEDVSSAPQTFGGRRSLYNTSQVLLAPKVLPPPSFDCQEYRYFLGYYWANDNRVRKALHIREGTTGEWVRCQDRNGYNFDIMNSVPYHANLSTKGYRSLIFSGDHDMNVPSTDTEAWIKSLNYSIVDDWRPWFNMDNQVVGYTRTYANNMTFATIKGGGHTPEYMQYQSGLLFDRWIAGESL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45051594 45059977 + Maker00016417 Lcy9g2019 643135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2019 538 Gene3D - 393 538 - -
Lcy9g2019 538 FunFam Carboxypeptidase 392 537 - -
Lcy9g2019 538 Pfam Serine carboxypeptidase 103 535 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2019 538 FunFam Serine carboxypeptidase-like 11 93 538 - -
Lcy9g2019 538 Gene3D alpha/beta hydrolase 92 367 IPR029058 -
Lcy9g2019 538 SUPERFAMILY alpha/beta-Hydrolases 99 535 IPR029058 -
Lcy9g2019 538 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 95 525 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Lcy9g2019 538 PRINTS Carboxypeptidase C serine protease (S10) family signature 197 207 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2019 538 PRINTS Carboxypeptidase C serine protease (S10) family signature 184 196 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2019 538 PRINTS Carboxypeptidase C serine protease (S10) family signature 506 519 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2019 538 PRINTS Carboxypeptidase C serine protease (S10) family signature 232 257 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1268 Lcy-Chr3:38521393 Lcy9g2019 Lcy-Chr9:45051594 6.89E-88 dispersed
Lcy9g2016 Lcy-Chr9:45020643 Lcy9g2019 Lcy-Chr9:45051594 2.66E-39 dispersed
Lcy9g2017 Lcy-Chr9:45026676 Lcy9g2019 Lcy-Chr9:45051594 6.98E-267 dispersed
Lcy9g2019 Lcy-Chr9:45051594 Lcy9g2027 Lcy-Chr9:45166990 3.05E-170 dispersed
Lcy9g2019 Lcy-Chr9:45051594 Lcy9g2020 Lcy-Chr9:45078237 6.38E-140 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2019 K16296 - csv:101207623 550.436