Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2019 | ATGAGGTGTCGCGTAGGTCAAACCTACGCGACATGTAAGGTCGCGTCTGTTGTAGAGACACGACCTCCGCAACCAGACGGCAACGAGATCGAACGAGACGGCAATGAGAAGGAATCGGCTTTCGGCATTGGGTCGCGTAGGTTGAAGAGACGCGACTTCGATGTCACATCAGCAAATGAGATTGAAGAACATTTTGTCTTAATTTCTCCGATGGCCACTTCTCCCTTCACTTGCTATGTTTTGTTGGTTGTTGTTTCTCCGACGTTCTTTGCCGCCGCAGATTCATCTTGGAATGTGAAGTATTTGCCTGGATTTTCAGGTTCTCTTCCATTCCAGCTCGAAACTGGATACGTGGGTGTGGGAGATTCGGACGAAGTTCAGTTGTTTTATTACTTTGTGAAATCTCAAGGAAATCCCAAAACGGATCCTTTAATGACATGGTACACTGGAGGTCCTGGTTGCTCTTCCCTCACCGGATTTCTCTTTGAAATTGGTCCGGTAGGTTTCAAGGTAGAGCCATACAATGGAAGCCTACCTCAACTAATCTTGAATCCTTATACATGGACCAAGAAAGCAAATATACTATTTATCGATACGCCCGTTGATAGTGGATTTTCATATGGTCGAACTGTACGAGGTTCTATGAAAGGAGATTATCTACAAGTTGAACAAAATCATCAATTTTTGAGAAAGTGGCTGGCCGATCATCCAGAATTTATATCTAATCCGTTTTATGTTGGTGGAGACTCATACACGGGTATTATTATTCCACCTCTTACTCAGGCTATTTCAGAGGGAAATAAACATGCTTCCCCAGTTATAAACCTTCAGGGATACATAGAAGGAAGTCCTGTCACTATACGTAATTCAAATGAAAATTTTAGGATTCCTTTTGCTCATGGCATGTCCCTCATCTCTAGTGAATTGTATGAGTCATTGACAACTAGTTGCAAAGGAGAATATCAGATTAAGAACATCGCTCCTAATAATTTGGAGTGCAAGAAACATGTAGAAACGTTTGAACAGCTTGTGAGCCAAATCAATTATATGTGTATTTCGTGGCCTTATTGTGAAGACGTTTCTTCAGCGCCACAAACATTTGGTGGGCGGAGATCTCTTTACAACACCTCCCAAGTGCTTCTTGCTCCTAAAGTGTTACCTCCTCCTTCTTTTGATTGTCAAGAGTATAGATATTTCCTTGGTTATTATTGGGCCAACGACAATCGAGTTCGGAAAGCACTTCATATACGTGAGGGAACTACTGGAGAATGGGTAAGATGTCAAGACCGTAATGGTTACAACTTTGACATTATGAATTCTGTCCCTTATCATGCAAACCTTAGTACTAAAGGTTATCGGTCTTTGATTTTTAGCGGAGATCATGATATGAATGTGCCAAGTACGGATACTGAAGCATGGATCAAATCTCTTAATTATTCCATTGTCGATGATTGGAGGCCTTGGTTTAACATGGACAATCAAGTAGTCGGATACACAAGAACATATGCAAATAACATGACATTTGCAACAATAAAAGGTGGAGGGCACACACCTGAATACATGCAATACCAAAGTGGATTATTATTTGATAGATGGATAGCGGGAGAATCTTTATAA | 1617 | 41.19 | MRCRVGQTYATCKVASVVETRPPQPDGNEIERDGNEKESAFGIGSRRLKRRDFDVTSANEIEEHFVLISPMATSPFTCYVLLVVVSPTFFAAADSSWNVKYLPGFSGSLPFQLETGYVGVGDSDEVQLFYYFVKSQGNPKTDPLMTWYTGGPGCSSLTGFLFEIGPVGFKVEPYNGSLPQLILNPYTWTKKANILFIDTPVDSGFSYGRTVRGSMKGDYLQVEQNHQFLRKWLADHPEFISNPFYVGGDSYTGIIIPPLTQAISEGNKHASPVINLQGYIEGSPVTIRNSNENFRIPFAHGMSLISSELYESLTTSCKGEYQIKNIAPNNLECKKHVETFEQLVSQINYMCISWPYCEDVSSAPQTFGGRRSLYNTSQVLLAPKVLPPPSFDCQEYRYFLGYYWANDNRVRKALHIREGTTGEWVRCQDRNGYNFDIMNSVPYHANLSTKGYRSLIFSGDHDMNVPSTDTEAWIKSLNYSIVDDWRPWFNMDNQVVGYTRTYANNMTFATIKGGGHTPEYMQYQSGLLFDRWIAGESL | 538 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 45051594 | 45059977 | + | Maker00016417 | Lcy9g2019 | 643135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2019 | 538 | Gene3D | - | 393 | 538 | - | - | |
Lcy9g2019 | 538 | FunFam | Carboxypeptidase | 392 | 537 | - | - | |
Lcy9g2019 | 538 | Pfam | Serine carboxypeptidase | 103 | 535 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Lcy9g2019 | 538 | FunFam | Serine carboxypeptidase-like 11 | 93 | 538 | - | - | |
Lcy9g2019 | 538 | Gene3D | alpha/beta hydrolase | 92 | 367 | IPR029058 | - | |
Lcy9g2019 | 538 | SUPERFAMILY | alpha/beta-Hydrolases | 99 | 535 | IPR029058 | - | |
Lcy9g2019 | 538 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 95 | 525 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER) | |
Lcy9g2019 | 538 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 197 | 207 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Lcy9g2019 | 538 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 184 | 196 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Lcy9g2019 | 538 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 506 | 519 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Lcy9g2019 | 538 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 232 | 257 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g1268 | Lcy-Chr3:38521393 | Lcy9g2019 | Lcy-Chr9:45051594 | 6.89E-88 | dispersed | |
Lcy9g2016 | Lcy-Chr9:45020643 | Lcy9g2019 | Lcy-Chr9:45051594 | 2.66E-39 | dispersed | |
Lcy9g2017 | Lcy-Chr9:45026676 | Lcy9g2019 | Lcy-Chr9:45051594 | 6.98E-267 | dispersed | |
Lcy9g2019 | Lcy-Chr9:45051594 | Lcy9g2027 | Lcy-Chr9:45166990 | 3.05E-170 | dispersed | |
Lcy9g2019 | Lcy-Chr9:45051594 | Lcy9g2020 | Lcy-Chr9:45078237 | 6.38E-140 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g2019 | K16296 | - | csv:101207623 | 550.436 |