Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2027 ATGGCCACAATATCTGTTTGGTTGGTCGCTGTTCTTCTGGCGTTCTCCGCCGTAGCGGCCGCCGCAGGGTCTCAGTGGACGGTGAAGTCGCTGCCGGGATTCCCAGGTCGTCTTCCTTTCGAACTGGAAACAGGATACGTGGGAGTGGGAAACTCAGAGGAATTTCAGCTCTTTTATTATTTTATCAAATCCGAAGCAAATCCCCAAACTGATCCTCTCATTTTGTGGCTTACCGGAGGCCCTGGCTGCTCTGCAATCTCTGGAATTGCCTTTGAAATTGGTAACTGTTTCCACAACTCTCTTGGGAAACTTTATAAATCAATTGGTGTTTCTGGAGAAAAAAATAAATCTAGTATAATATTTGTAGATTTGCCGGTGGGCACTGGGTTTTCGTATGCTAGAACTTCAAAAATTCCTAAACCAGGAGATTCTTATCAAATTCATCATGCTCTTCAATTCTTGAGAAAGTGGTTGGGTGATCATCCAGAATTTATATCAAATCCCTTCTATATTGGTGGAGACTCATACTCTGGTATGATCGTTCCGGTTGTTGCTCACAAAATTTTGGAAGGAAATGAACATATTGTTCCATTTGTAAATTTCCAGGGATACATATTGGGAAATCCTTTCACTACTCCTCATTCAGATAAAAATGCACAAATCCCTTTTGCTCATAACATGGGTCTCATCTCTGATGAATTGTTTGAGTTGTTGAAAACTAGTTGCCAAGGAGAATATGTGAACATTGATCCAAATGATGTGGAGTGCTTAAGACATTATGATACATTTAAAAAGGAGTATGACCACTTACTTTCTTATTATTGGGCTAACCATGACCAAGTCCGAAAAGCACTTCATATACATGAGGGAAGCATTGGAGAATGGATAAGATGTAAATACAAGGATTACTACAATTATGAACTTATTAGTGTTGTTCCTTATCACGCGATTCTTAGTTCTAAAGGATATCGGTCTTTAATCTATAGTGGGGATCATGATATGATAGTGCCACATATAGAAACTCAAGCATGGATCAAATCTTTAAACTATTCCATTGTTGATGACTGGAGGCCATGGTTCATCGAGGATGAAGTAGCAGGATATACGAGAAGCTTTGCAAATAAGATGACATTTGCAACTATAAAAGGTGGAGGGCACACAGCAGAATACACACGAAAAGAATGTAGCATACTATTTAGTAGATGGATAGCAGGAGAATCCATATAA 1227 39.45 MATISVWLVAVLLAFSAVAAAAGSQWTVKSLPGFPGRLPFELETGYVGVGNSEEFQLFYYFIKSEANPQTDPLILWLTGGPGCSAISGIAFEIGNCFHNSLGKLYKSIGVSGEKNKSSIIFVDLPVGTGFSYARTSKIPKPGDSYQIHHALQFLRKWLGDHPEFISNPFYIGGDSYSGMIVPVVAHKILEGNEHIVPFVNFQGYILGNPFTTPHSDKNAQIPFAHNMGLISDELFELLKTSCQGEYVNIDPNDVECLRHYDTFKKEYDHLLSYYWANHDQVRKALHIHEGSIGEWIRCKYKDYYNYELISVVPYHAILSSKGYRSLIYSGDHDMIVPHIETQAWIKSLNYSIVDDWRPWFIEDEVAGYTRSFANKMTFATIKGGGHTAEYTRKECSILFSRWIAGESI 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45166990 45170799 + Maker00016976 Lcy9g2027 643143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2027 408 Pfam Serine carboxypeptidase 268 405 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2027 408 Pfam Serine carboxypeptidase 32 266 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2027 408 Gene3D alpha/beta hydrolase 21 408 IPR029058 -
Lcy9g2027 408 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2027 408 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2027 408 PRINTS Carboxypeptidase C serine protease (S10) family signature 376 389 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy9g2027 408 SUPERFAMILY alpha/beta-Hydrolases 27 405 IPR029058 -
Lcy9g2027 408 FunFam Carboxypeptidase 264 407 - -
Lcy9g2027 408 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 402 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1242 Lcy-Chr7:15530169 Lcy9g2027 Lcy-Chr9:45166990 7.97E-33 dispersed
Lcy9g2019 Lcy-Chr9:45051594 Lcy9g2027 Lcy-Chr9:45166990 3.05E-170 dispersed
Lcy9g2020 Lcy-Chr9:45078237 Lcy9g2027 Lcy-Chr9:45166990 5.64E-130 dispersed
Lcy9g2023 Lcy-Chr9:45110538 Lcy9g2027 Lcy-Chr9:45166990 4.07E-153 dispersed
Lcy9g2027 Lcy-Chr9:45166990 Lcy11g0787 Lcy-Chr11:23393956 2.15E-08 dispersed
Lcy9g2026 Lcy-Chr9:45148514 Lcy9g2027 Lcy-Chr9:45166990 2.15E-203 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2027 K16296 - csv:101210918 573.163