Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2037 ATGTGGAAGAAACTTCCTAATAGCTTCCAATTCACTGTTGTAGTGGTCAAAGATGATGGTTTTGGTTCAAACCAACCAATTATAAAAGAATTTGCAGAATCAGCCACCGGAGGCCATGGAGTCAAAACGAAGCTGCTGAAGAATCAGAGGTCAGAAGGTAATAGAGTTGGGATGGAAAGTTATTTGAACGAACATTTCGGGGACGTGAAGCCGAAGAACTCGTCCGATGAAGCGCTTCAGAGATGGAGGCGCCTTTGCTGGTTGGTCAAGAATCGGAAACGGAGGTTTCGATTTACTGCTAATCTCTCTAAACGATTTGAGGCCGATGCTATTAGACGCTCCAATCAGGAGAAGTTCAGAGTTGCAGTTTTGGTTTCACAAGCCGCGCTTCAGTTCATCAATGGGTTGGATTTATCTCCTGATTACGTTGTGCCTGAAGAGGTCAGGCAAGCAGGTTTTGAAATTTGTGCTGATGAAGCAGGCTCCATTGTTGACGGCCATGACATGAAGAAGCTGAAGACTCATGGGGGTGCTGAGAGTATCGCAACTAAGCTTGCCACATCAACGGAGACAGGCATTCCTACTACGGACCATTTGATCAAGAAAAGACAAGAGATTTATGGAATTAACAAATTCACCGAAAGCCCAGCTCGAGGATTTTGGCTCTTTGTTTGGGAAGCTCTCCAGGATACGACTCTAATGATACTCGCTTTCTGTGCTGTAGTTTCCCTTCTTGTTGGCATAGTGATGGAAGGATGGCCGAAGGGTGCTCATGATGGGCTCGGCATTGTTGCAAGTATCTTGCTTGTTGTATTTGTCACTGCTACCAGTGACTATAGGCAATCGCTCCAGTTCAAGGATTTGGACAGGGAAAAGAAGAAAATTGCGGTTCAGGTTACTCGAAATGGGTTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATATTGTTCATCTTGCCATGGGTGATCAGGTACCAGCAGATGGACTTTTCGTTTCAGGGTACTCTCTTCTGATAAATGAATCTAGTTTAACAGGTGAGAGTGAACCAGTTAACGTAAATTGTCAAAACCCTTTCCTCTTGTCCGGAACAAAAGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTTGGCATGAGGACCCAATGGGGCAAACTGATGGCCACTCTTAGTGAAGGAGGAGATGATGAGACTCCTTTGCAGGTAAAGCTAAATGGAGTGGCAACAATTATTGGAAAAATAGGTCTGTTTTTTGCTGTCATAACTTTCGCTGTATTGGTTCAAGGATTGTTCAGTCGCAAGCTACAAGAAGGGTCTTACTTCAGCTGGTCTGGAGATGAAGCAATGGAAGTTTTGGAATTCTTTGCTGTTGCCGTTACGATTGTTGTGGTTGCTGTGCCTGAAGGGCTGCCTTTGGCGGTGACACTGAGCCTTGCTTTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTGGCTGCTTGTGAGACGATGGGATCAGCTACTACTATTTGCAGCGACAAAACTGGGACATTGACGACTAACCACATGACTGTTGTGAAAGCTTGCATCTGCAGTAAGGTCAAGGAAGTTAGCAATTCAAGCAAGTGTTCTGATTATCGTTCAGAACTTCCCGACTCCGCTGTGGGTATTTTACTGCAATCGATATTTAACAACACTGGTGGAGAAATCGTCAAGAACAAAGATGGCGAAAATGAGATACTTGGGACGCCCACCGAGTCTGCTCTTCTGGAATTTGGCCTTCTGCTTGGTGGGGATTTCCAAGAAGAACGCCAAAAGTCAAAAATCGCGAGAGTCGAGCCCTTCAATTCTGTGAAGAAACGAATGGGTGTTGTTTTGGAGCTACCATCCGGTGTCTTCCGCGCACACAGCAAAGGTGCTTCAGAGATCGTTTTGGCTTCATGTGACAAAGTTCTTGACTCTAACGGTGAGGCAGTTCCTCTCAATGAAGAGTCCATCAACTTTTTGAAGGAAACCATCGAAGAATTTGCGGGCGAAGCTCTTCGAACATTGTGCCTGGCTTACATGGACATCGAGGGTGAGTATCAGTCTGAAAGTCCGATTCCCGTTAGTGGCTACACGTGCATAGGAATTGTTGGTATCAAGGATCCCGTTCGTCCGGGTGTCAAGGAGTCTGTTGCAATTTGCAAGGCCGCCGGTATAACCGTACGGATGGTTACGGGAGATAACATCACCACCGCCAAAGCAATTGCCAGGGAATGTGGAATTTTGACTGACGATGGTATAGCAATTGAAGGTCCTGAATTCCGGGAGAAGAAGGAGGAAGAGTTGAGTAAAATAGTACCAAAAATTCAGGTTATGGCTCGATCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGGACCACTTTTCAAGAAGTCGTTGCAGTGACTGGGGATGGCACAAATGATGCTCCGGCGCTCCATGAAGCAGATATTGGATTAGCTATGGGCATCGCTGGAACTGAGGTGGCAAAAGAGAGTGCTGATGTAATAATTCTCGACGACAACTTCTCTACAATTGCTACGGTTGCCAAATGGGGACGTTCAGTCTACATAAATATCCAAAAGTTTGTTCAGTTTCAGCTAACAGTGAATGTGGTTGCACTTCTCGTCAATTTTTCTTCAGCCTGTTTGACAGGAAATGCTCCCCTCACTGCTGTGCAACTGCTATGGGTCAACATGATAATGGACACACTCGGAGCACTTGCATTGGCAACCGAGCCTCCTACTGATGACTTGATGAAGAGATTGCCAGTTGGTCGGAAAGGGAATTTCATTAGCAATGTGATGTGGAGAAATATCTTAGGGCAGTCAGTATATCAGTTTGTCATAGTTTGGTATCTCCAGACAAGAGGGCAAGCTCTTTTTCATCTTGATGGCCCAGACTCTGGATTGATTCTGAATACACTGATTTTCAATGCATTCGTCTTTTGTCAGGTTTTCAATGAGATAAGCTCAAGAGACATGGAAAAGATAAATGTGTTTGAAGGAATACTGAAGAACTACGTGTTTGTGGCAGTGCTCGCTTGCACTGTCCTTTTCCAGATCATAATCATCCAATTCCTGGGAACATTCGCAAACACCTATCCTCTAAACTCTCAGCAATGGTTTGTGACCGTGTTATTTGGATTTCTTGGCATGCCAATTGCAGCAGCTTTGAAGATGATTCCGGTAGGATCAAACTGA 3234 44.77 MWKKLPNSFQFTVVVVKDDGFGSNQPIIKEFAESATGGHGVKTKLLKNQRSEGNRVGMESYLNEHFGDVKPKNSSDEALQRWRRLCWLVKNRKRRFRFTANLSKRFEADAIRRSNQEKFRVAVLVSQAALQFINGLDLSPDYVVPEEVRQAGFEICADEAGSIVDGHDMKKLKTHGGAESIATKLATSTETGIPTTDHLIKKRQEIYGINKFTESPARGFWLFVWEALQDTTLMILAFCAVVSLLVGIVMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAVQVTRNGLRQKISIYELLPGDIVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNVNCQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFSRKLQEGSYFSWSGDEAMEVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICSKVKEVSNSSKCSDYRSELPDSAVGILLQSIFNNTGGEIVKNKDGENEILGTPTESALLEFGLLLGGDFQEERQKSKIARVEPFNSVKKRMGVVLELPSGVFRAHSKGASEIVLASCDKVLDSNGEAVPLNEESINFLKETIEEFAGEALRTLCLAYMDIEGEYQSESPIPVSGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKKEEELSKIVPKIQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSVYQFVIVWYLQTRGQALFHLDGPDSGLILNTLIFNAFVFCQVFNEISSRDMEKINVFEGILKNYVFVAVLACTVLFQIIIIQFLGTFANTYPLNSQQWFVTVLFGFLGMPIAAALKMIPVGSN 1077
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 45244753 45250700 + Maker00016889 Lcy9g2037 643153
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2037 1077 PANTHER CATION TRANSPORTING ATPASE 142 1074 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Lcy9g2037 1077 Pfam haloacid dehalogenase-like hydrolase 687 827 - -
Lcy9g2037 1077 Pfam E1-E2 ATPase 294 490 - -
Lcy9g2037 1077 SFLD p-type atpase 493 865 IPR044492 -
Lcy9g2037 1077 SFLD Haloacid Dehalogenase 493 865 - -
Lcy9g2037 1077 CDD P-type_ATPase_Ca_PMCA-like 202 946 - -
Lcy9g2037 1077 SUPERFAMILY Calcium ATPase, transmembrane domain M 176 1073 IPR023298 -
Lcy9g2037 1077 Gene3D - 226 1072 - -
Lcy9g2037 1077 PRINTS H+-transporting ATPase (proton pump) signature 845 870 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g2037 1077 PRINTS H+-transporting ATPase (proton pump) signature 669 687 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g2037 1077 PRINTS H+-transporting ATPase (proton pump) signature 813 829 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g2037 1077 Gene3D - 74 134 - -
Lcy9g2037 1077 NCBIfam calcium-translocating P-type ATPase, PMCA-type 164 1074 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Lcy9g2037 1077 Gene3D - 508 858 IPR023214 -
Lcy9g2037 1077 FunFam Calcium-transporting ATPase 274 394 - -
Lcy9g2037 1077 Pfam Cation transporting ATPase, C-terminus 898 1072 IPR006068 -
Lcy9g2037 1077 SUPERFAMILY HAD-like 509 918 IPR036412 -
Lcy9g2037 1077 Pfam Cation transport ATPase (P-type) 572 651 - -
Lcy9g2037 1077 SUPERFAMILY Calcium ATPase, transduction domain A 296 391 IPR008250 -
Lcy9g2037 1077 Pfam Ca2+-ATPase N terminal autoinhibitory domain 62 107 IPR024750 GO:0005516(InterPro)
Lcy9g2037 1077 NCBIfam HAD-IC family P-type ATPase 778 894 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g2037 1077 NCBIfam HAD-IC family P-type ATPase 607 758 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g2037 1077 NCBIfam HAD-IC family P-type ATPase 263 434 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g2037 1077 NCBIfam HAD-IC family P-type ATPase 444 534 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy9g2037 1077 Gene3D - 521 717 IPR023299 GO:0000166(InterPro)
Lcy9g2037 1077 SMART Cation_ATPase_N_a_2 172 248 IPR004014 -
Lcy9g2037 1077 Pfam Cation transporter/ATPase, N-terminus 175 243 IPR004014 -
Lcy9g2037 1077 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 517 722 IPR023299 GO:0000166(InterPro)
Lcy9g2037 1077 FunFam Calcium-transporting ATPase 74 134 - -
Lcy9g2037 1077 PRINTS P-type cation-transporting ATPase superfamily signature 342 356 - -
Lcy9g2037 1077 PRINTS P-type cation-transporting ATPase superfamily signature 837 849 - -
Lcy9g2037 1077 PRINTS P-type cation-transporting ATPase superfamily signature 710 721 - -
Lcy9g2037 1077 PRINTS P-type cation-transporting ATPase superfamily signature 511 525 - -
Lcy9g2037 1077 PRINTS P-type cation-transporting ATPase superfamily signature 732 742 - -
Lcy9g2037 1077 PRINTS P-type cation-transporting ATPase superfamily signature 813 832 - -
Lcy9g2037 1077 FunFam Calcium-transporting ATPase 830 1076 - -
Lcy9g2037 1077 FunFam Calcium-transporting ATPase 706 858 - -
Lcy9g2037 1077 FunFam Calcium-transporting ATPase 521 717 - -
Lcy9g2037 1077 Gene3D - 199 394 - -
Lcy9g2037 1077 ProSitePatterns E1-E2 ATPases phosphorylation site. 513 519 IPR018303 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1080 Lcy-Chr10:33013924 Lcy9g2037 Lcy-Chr9:45244753 0 dispersed
Lcy7g0397 Lcy-Chr7:3379038 Lcy9g2037 Lcy-Chr9:45244753 1.38E-06 dispersed
Lcy9g2037 Lcy-Chr9:45244753 Lcy10g1644 Lcy-Chr10:40841248 1.80E-06 dispersed
Lcy4g1594 Lcy-Chr4:40186691 Lcy9g2037 Lcy-Chr9:45244753 1.22E-281 transposed
Lcy4g1966 Lcy-Chr4:46044449 Lcy9g2037 Lcy-Chr9:45244753 9.77E-265 transposed
Lcy1g0909 Lcy-Chr1:7934281 Lcy9g2037 Lcy-Chr9:45244753 0 wgd
Lcy13g2144 Lcy-Chr13:40319697 Lcy9g2037 Lcy-Chr9:45244753 1.80E-06 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2037 K01537 - csv:101221694 1903.64