Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g2037 | ATGTGGAAGAAACTTCCTAATAGCTTCCAATTCACTGTTGTAGTGGTCAAAGATGATGGTTTTGGTTCAAACCAACCAATTATAAAAGAATTTGCAGAATCAGCCACCGGAGGCCATGGAGTCAAAACGAAGCTGCTGAAGAATCAGAGGTCAGAAGGTAATAGAGTTGGGATGGAAAGTTATTTGAACGAACATTTCGGGGACGTGAAGCCGAAGAACTCGTCCGATGAAGCGCTTCAGAGATGGAGGCGCCTTTGCTGGTTGGTCAAGAATCGGAAACGGAGGTTTCGATTTACTGCTAATCTCTCTAAACGATTTGAGGCCGATGCTATTAGACGCTCCAATCAGGAGAAGTTCAGAGTTGCAGTTTTGGTTTCACAAGCCGCGCTTCAGTTCATCAATGGGTTGGATTTATCTCCTGATTACGTTGTGCCTGAAGAGGTCAGGCAAGCAGGTTTTGAAATTTGTGCTGATGAAGCAGGCTCCATTGTTGACGGCCATGACATGAAGAAGCTGAAGACTCATGGGGGTGCTGAGAGTATCGCAACTAAGCTTGCCACATCAACGGAGACAGGCATTCCTACTACGGACCATTTGATCAAGAAAAGACAAGAGATTTATGGAATTAACAAATTCACCGAAAGCCCAGCTCGAGGATTTTGGCTCTTTGTTTGGGAAGCTCTCCAGGATACGACTCTAATGATACTCGCTTTCTGTGCTGTAGTTTCCCTTCTTGTTGGCATAGTGATGGAAGGATGGCCGAAGGGTGCTCATGATGGGCTCGGCATTGTTGCAAGTATCTTGCTTGTTGTATTTGTCACTGCTACCAGTGACTATAGGCAATCGCTCCAGTTCAAGGATTTGGACAGGGAAAAGAAGAAAATTGCGGTTCAGGTTACTCGAAATGGGTTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATATTGTTCATCTTGCCATGGGTGATCAGGTACCAGCAGATGGACTTTTCGTTTCAGGGTACTCTCTTCTGATAAATGAATCTAGTTTAACAGGTGAGAGTGAACCAGTTAACGTAAATTGTCAAAACCCTTTCCTCTTGTCCGGAACAAAAGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTTGGCATGAGGACCCAATGGGGCAAACTGATGGCCACTCTTAGTGAAGGAGGAGATGATGAGACTCCTTTGCAGGTAAAGCTAAATGGAGTGGCAACAATTATTGGAAAAATAGGTCTGTTTTTTGCTGTCATAACTTTCGCTGTATTGGTTCAAGGATTGTTCAGTCGCAAGCTACAAGAAGGGTCTTACTTCAGCTGGTCTGGAGATGAAGCAATGGAAGTTTTGGAATTCTTTGCTGTTGCCGTTACGATTGTTGTGGTTGCTGTGCCTGAAGGGCTGCCTTTGGCGGTGACACTGAGCCTTGCTTTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTGGCTGCTTGTGAGACGATGGGATCAGCTACTACTATTTGCAGCGACAAAACTGGGACATTGACGACTAACCACATGACTGTTGTGAAAGCTTGCATCTGCAGTAAGGTCAAGGAAGTTAGCAATTCAAGCAAGTGTTCTGATTATCGTTCAGAACTTCCCGACTCCGCTGTGGGTATTTTACTGCAATCGATATTTAACAACACTGGTGGAGAAATCGTCAAGAACAAAGATGGCGAAAATGAGATACTTGGGACGCCCACCGAGTCTGCTCTTCTGGAATTTGGCCTTCTGCTTGGTGGGGATTTCCAAGAAGAACGCCAAAAGTCAAAAATCGCGAGAGTCGAGCCCTTCAATTCTGTGAAGAAACGAATGGGTGTTGTTTTGGAGCTACCATCCGGTGTCTTCCGCGCACACAGCAAAGGTGCTTCAGAGATCGTTTTGGCTTCATGTGACAAAGTTCTTGACTCTAACGGTGAGGCAGTTCCTCTCAATGAAGAGTCCATCAACTTTTTGAAGGAAACCATCGAAGAATTTGCGGGCGAAGCTCTTCGAACATTGTGCCTGGCTTACATGGACATCGAGGGTGAGTATCAGTCTGAAAGTCCGATTCCCGTTAGTGGCTACACGTGCATAGGAATTGTTGGTATCAAGGATCCCGTTCGTCCGGGTGTCAAGGAGTCTGTTGCAATTTGCAAGGCCGCCGGTATAACCGTACGGATGGTTACGGGAGATAACATCACCACCGCCAAAGCAATTGCCAGGGAATGTGGAATTTTGACTGACGATGGTATAGCAATTGAAGGTCCTGAATTCCGGGAGAAGAAGGAGGAAGAGTTGAGTAAAATAGTACCAAAAATTCAGGTTATGGCTCGATCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGGACCACTTTTCAAGAAGTCGTTGCAGTGACTGGGGATGGCACAAATGATGCTCCGGCGCTCCATGAAGCAGATATTGGATTAGCTATGGGCATCGCTGGAACTGAGGTGGCAAAAGAGAGTGCTGATGTAATAATTCTCGACGACAACTTCTCTACAATTGCTACGGTTGCCAAATGGGGACGTTCAGTCTACATAAATATCCAAAAGTTTGTTCAGTTTCAGCTAACAGTGAATGTGGTTGCACTTCTCGTCAATTTTTCTTCAGCCTGTTTGACAGGAAATGCTCCCCTCACTGCTGTGCAACTGCTATGGGTCAACATGATAATGGACACACTCGGAGCACTTGCATTGGCAACCGAGCCTCCTACTGATGACTTGATGAAGAGATTGCCAGTTGGTCGGAAAGGGAATTTCATTAGCAATGTGATGTGGAGAAATATCTTAGGGCAGTCAGTATATCAGTTTGTCATAGTTTGGTATCTCCAGACAAGAGGGCAAGCTCTTTTTCATCTTGATGGCCCAGACTCTGGATTGATTCTGAATACACTGATTTTCAATGCATTCGTCTTTTGTCAGGTTTTCAATGAGATAAGCTCAAGAGACATGGAAAAGATAAATGTGTTTGAAGGAATACTGAAGAACTACGTGTTTGTGGCAGTGCTCGCTTGCACTGTCCTTTTCCAGATCATAATCATCCAATTCCTGGGAACATTCGCAAACACCTATCCTCTAAACTCTCAGCAATGGTTTGTGACCGTGTTATTTGGATTTCTTGGCATGCCAATTGCAGCAGCTTTGAAGATGATTCCGGTAGGATCAAACTGA | 3234 | 44.77 | MWKKLPNSFQFTVVVVKDDGFGSNQPIIKEFAESATGGHGVKTKLLKNQRSEGNRVGMESYLNEHFGDVKPKNSSDEALQRWRRLCWLVKNRKRRFRFTANLSKRFEADAIRRSNQEKFRVAVLVSQAALQFINGLDLSPDYVVPEEVRQAGFEICADEAGSIVDGHDMKKLKTHGGAESIATKLATSTETGIPTTDHLIKKRQEIYGINKFTESPARGFWLFVWEALQDTTLMILAFCAVVSLLVGIVMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAVQVTRNGLRQKISIYELLPGDIVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNVNCQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFSRKLQEGSYFSWSGDEAMEVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICSKVKEVSNSSKCSDYRSELPDSAVGILLQSIFNNTGGEIVKNKDGENEILGTPTESALLEFGLLLGGDFQEERQKSKIARVEPFNSVKKRMGVVLELPSGVFRAHSKGASEIVLASCDKVLDSNGEAVPLNEESINFLKETIEEFAGEALRTLCLAYMDIEGEYQSESPIPVSGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKKEEELSKIVPKIQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSVYQFVIVWYLQTRGQALFHLDGPDSGLILNTLIFNAFVFCQVFNEISSRDMEKINVFEGILKNYVFVAVLACTVLFQIIIIQFLGTFANTYPLNSQQWFVTVLFGFLGMPIAAALKMIPVGSN | 1077 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 45244753 | 45250700 | + | Maker00016889 | Lcy9g2037 | 643153 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g2037 | 1077 | PANTHER | CATION TRANSPORTING ATPASE | 142 | 1074 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lcy9g2037 | 1077 | Pfam | haloacid dehalogenase-like hydrolase | 687 | 827 | - | - | |
| Lcy9g2037 | 1077 | Pfam | E1-E2 ATPase | 294 | 490 | - | - | |
| Lcy9g2037 | 1077 | SFLD | p-type atpase | 493 | 865 | IPR044492 | - | |
| Lcy9g2037 | 1077 | SFLD | Haloacid Dehalogenase | 493 | 865 | - | - | |
| Lcy9g2037 | 1077 | CDD | P-type_ATPase_Ca_PMCA-like | 202 | 946 | - | - | |
| Lcy9g2037 | 1077 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 176 | 1073 | IPR023298 | - | |
| Lcy9g2037 | 1077 | Gene3D | - | 226 | 1072 | - | - | |
| Lcy9g2037 | 1077 | PRINTS | H+-transporting ATPase (proton pump) signature | 845 | 870 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g2037 | 1077 | PRINTS | H+-transporting ATPase (proton pump) signature | 669 | 687 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g2037 | 1077 | PRINTS | H+-transporting ATPase (proton pump) signature | 813 | 829 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g2037 | 1077 | Gene3D | - | 74 | 134 | - | - | |
| Lcy9g2037 | 1077 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 164 | 1074 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lcy9g2037 | 1077 | Gene3D | - | 508 | 858 | IPR023214 | - | |
| Lcy9g2037 | 1077 | FunFam | Calcium-transporting ATPase | 274 | 394 | - | - | |
| Lcy9g2037 | 1077 | Pfam | Cation transporting ATPase, C-terminus | 898 | 1072 | IPR006068 | - | |
| Lcy9g2037 | 1077 | SUPERFAMILY | HAD-like | 509 | 918 | IPR036412 | - | |
| Lcy9g2037 | 1077 | Pfam | Cation transport ATPase (P-type) | 572 | 651 | - | - | |
| Lcy9g2037 | 1077 | SUPERFAMILY | Calcium ATPase, transduction domain A | 296 | 391 | IPR008250 | - | |
| Lcy9g2037 | 1077 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 62 | 107 | IPR024750 | GO:0005516(InterPro) | |
| Lcy9g2037 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 778 | 894 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g2037 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 607 | 758 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g2037 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 263 | 434 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g2037 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 444 | 534 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g2037 | 1077 | Gene3D | - | 521 | 717 | IPR023299 | GO:0000166(InterPro) | |
| Lcy9g2037 | 1077 | SMART | Cation_ATPase_N_a_2 | 172 | 248 | IPR004014 | - | |
| Lcy9g2037 | 1077 | Pfam | Cation transporter/ATPase, N-terminus | 175 | 243 | IPR004014 | - | |
| Lcy9g2037 | 1077 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 517 | 722 | IPR023299 | GO:0000166(InterPro) | |
| Lcy9g2037 | 1077 | FunFam | Calcium-transporting ATPase | 74 | 134 | - | - | |
| Lcy9g2037 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 342 | 356 | - | - | |
| Lcy9g2037 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 837 | 849 | - | - | |
| Lcy9g2037 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 710 | 721 | - | - | |
| Lcy9g2037 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 511 | 525 | - | - | |
| Lcy9g2037 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 732 | 742 | - | - | |
| Lcy9g2037 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 813 | 832 | - | - | |
| Lcy9g2037 | 1077 | FunFam | Calcium-transporting ATPase | 830 | 1076 | - | - | |
| Lcy9g2037 | 1077 | FunFam | Calcium-transporting ATPase | 706 | 858 | - | - | |
| Lcy9g2037 | 1077 | FunFam | Calcium-transporting ATPase | 521 | 717 | - | - | |
| Lcy9g2037 | 1077 | Gene3D | - | 199 | 394 | - | - | |
| Lcy9g2037 | 1077 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 513 | 519 | IPR018303 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1080 | Lcy-Chr10:33013924 | Lcy9g2037 | Lcy-Chr9:45244753 | 0 | dispersed | |
| Lcy7g0397 | Lcy-Chr7:3379038 | Lcy9g2037 | Lcy-Chr9:45244753 | 1.38E-06 | dispersed | |
| Lcy9g2037 | Lcy-Chr9:45244753 | Lcy10g1644 | Lcy-Chr10:40841248 | 1.80E-06 | dispersed | |
| Lcy4g1594 | Lcy-Chr4:40186691 | Lcy9g2037 | Lcy-Chr9:45244753 | 1.22E-281 | transposed | |
| Lcy4g1966 | Lcy-Chr4:46044449 | Lcy9g2037 | Lcy-Chr9:45244753 | 9.77E-265 | transposed | |
| Lcy1g0909 | Lcy-Chr1:7934281 | Lcy9g2037 | Lcy-Chr9:45244753 | 0 | wgd | |
| Lcy13g2144 | Lcy-Chr13:40319697 | Lcy9g2037 | Lcy-Chr9:45244753 | 1.80E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g2037 | K01537 | - | csv:101221694 | 1903.64 |