Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2042 ATGGATTCTTTTGGAGGGTTCAGTACTGAAGGGGAATGGGATCTGTGCGGCTCAATTTTATCATTGGAAGAGCTTGATTTTACGCCAATTCCCGAGGCCACGGCGGGGATTGCCGATGCTTGGTTTTGTTCTTTGGATTCTTTTACTGCCAATTTGAATTCTTGTGTTTTTGGAGCTTATTCTGGAGATGAAAATGACAATGCTGTCGATCAATTTGCTTGTGTCGGCGCTGCTGATTATCATATGTCGATGTCTGGTGGTGCGATTGAAGAGACGAAGATGGAGTCTGTTTTCTCGGCTTGTAATGACATTTTGCTGCAAGAGATCAATGGCTTTTGCAGTGAAGATAGATTTTTAAACGTGGATGTTGAAACCCATCAAGGGGATAATGCTAGCAATCCTGCAAATGCATTGCACCACAAAAGGAAATCCATTGTTGTCGCTGGTGGGGATGATGATCTTCATCACAACAAGCTCAACAACGACCCCAATAAGAGAATTCGTACTTCAAACAATAAAACTAGGAAGGGCACACAGTCAAATGCTAAGACCAACCAGAAATTGAGCACTCGGCGGCGCAAATGTGAAGAAGAACAGGAAAATGGAGGGTCTGATATGAACAGTTGCAGCAGCGATAACTCATCAGAGACGGATGACAATGCTTCACAAGATACTAACGGAGCCACAGTTTTAGAAGGCAACGCGTACCCTGCAAAAGGCAAGACCAGAGCCTCCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGCCTCAGAATTCTGCAGAAACTAGTCCCAAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGACTTGTGGATGTACGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA 999 43.84 MDSFGGFSTEGEWDLCGSILSLEELDFTPIPEATAGIADAWFCSLDSFTANLNSCVFGAYSGDENDNAVDQFACVGAADYHMSMSGGAIEETKMESVFSACNDILLQEINGFCSEDRFLNVDVETHQGDNASNPANALHHKRKSIVVAGGDDDLHHNKLNNDPNKRIRTSNNKTRKGTQSNAKTNQKLSTRRRKCEEEQENGGSDMNSCSSDNSSETDDNASQDTNGATVLEGNAYPAKGKTRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLQQKLSSFL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45292387 45294027 - Maker00016708 Lcy9g2042 643158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2042 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 314 IPR036638 GO:0046983(InterPro)
Lcy9g2042 332 MobiDBLite consensus disorder prediction 148 260 - -
Lcy9g2042 332 MobiDBLite consensus disorder prediction 148 163 - -
Lcy9g2042 332 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 121 308 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2042 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 248 297 IPR011598 GO:0046983(InterPro)
Lcy9g2042 332 Gene3D - 250 306 IPR036638 GO:0046983(InterPro)
Lcy9g2042 332 CDD bHLH_AtIND_like 249 311 - -
Lcy9g2042 332 SMART finulus 254 303 IPR011598 GO:0046983(InterPro)
Lcy9g2042 332 Pfam Helix-loop-helix DNA-binding domain 258 298 IPR011598 GO:0046983(InterPro)
Lcy9g2042 332 MobiDBLite consensus disorder prediction 202 230 - -
Lcy9g2042 332 FunFam Basic helix-loop-helix transcription factor 249 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1145 Lcy-Chr10:33871325 Lcy9g2042 Lcy-Chr9:45292387 8.76E-21 dispersed
Lcy4g0587 Lcy-Chr4:7077039 Lcy9g2042 Lcy-Chr9:45292387 3.75E-09 dispersed
Lcy8g0681 Lcy-Chr8:24954688 Lcy9g2042 Lcy-Chr9:45292387 1.16E-15 dispersed
Lcy9g1468 Lcy-Chr9:39739713 Lcy9g2042 Lcy-Chr9:45292387 5.77E-08 dispersed
Lcy9g2004 Lcy-Chr9:44925824 Lcy9g2042 Lcy-Chr9:45292387 4.71E-09 dispersed
Lcy9g2042 Lcy-Chr9:45292387 Lcy9g0203 Lcy-Chr9:4782003 7.52E-47 dispersed
Lcy13g2155 Lcy-Chr13:40466769 Lcy9g2042 Lcy-Chr9:45292387 8.82E-08 wgd
Lcy13g2130 Lcy-Chr13:40209447 Lcy9g2042 Lcy-Chr9:45292387 1.15E-46 wgd
Lcy4g0174 Lcy-Chr4:2239805 Lcy9g2042 Lcy-Chr9:45292387 9.94E-27 wgd
Lcy6g0477 Lcy-Chr6:4499006 Lcy9g2042 Lcy-Chr9:45292387 8.75E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20713 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2042 - - - 0.0