Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2042 | ATGGATTCTTTTGGAGGGTTCAGTACTGAAGGGGAATGGGATCTGTGCGGCTCAATTTTATCATTGGAAGAGCTTGATTTTACGCCAATTCCCGAGGCCACGGCGGGGATTGCCGATGCTTGGTTTTGTTCTTTGGATTCTTTTACTGCCAATTTGAATTCTTGTGTTTTTGGAGCTTATTCTGGAGATGAAAATGACAATGCTGTCGATCAATTTGCTTGTGTCGGCGCTGCTGATTATCATATGTCGATGTCTGGTGGTGCGATTGAAGAGACGAAGATGGAGTCTGTTTTCTCGGCTTGTAATGACATTTTGCTGCAAGAGATCAATGGCTTTTGCAGTGAAGATAGATTTTTAAACGTGGATGTTGAAACCCATCAAGGGGATAATGCTAGCAATCCTGCAAATGCATTGCACCACAAAAGGAAATCCATTGTTGTCGCTGGTGGGGATGATGATCTTCATCACAACAAGCTCAACAACGACCCCAATAAGAGAATTCGTACTTCAAACAATAAAACTAGGAAGGGCACACAGTCAAATGCTAAGACCAACCAGAAATTGAGCACTCGGCGGCGCAAATGTGAAGAAGAACAGGAAAATGGAGGGTCTGATATGAACAGTTGCAGCAGCGATAACTCATCAGAGACGGATGACAATGCTTCACAAGATACTAACGGAGCCACAGTTTTAGAAGGCAACGCGTACCCTGCAAAAGGCAAGACCAGAGCCTCCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGCCTCAGAATTCTGCAGAAACTAGTCCCAAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGACTTGTGGATGTACGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA | 999 | 43.84 | MDSFGGFSTEGEWDLCGSILSLEELDFTPIPEATAGIADAWFCSLDSFTANLNSCVFGAYSGDENDNAVDQFACVGAADYHMSMSGGAIEETKMESVFSACNDILLQEINGFCSEDRFLNVDVETHQGDNASNPANALHHKRKSIVVAGGDDDLHHNKLNNDPNKRIRTSNNKTRKGTQSNAKTNQKLSTRRRKCEEEQENGGSDMNSCSSDNSSETDDNASQDTNGATVLEGNAYPAKGKTRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLQQKLSSFL | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 45292387 | 45294027 | - | Maker00016708 | Lcy9g2042 | 643158 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2042 | 332 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 248 | 314 | IPR036638 | GO:0046983(InterPro) | |
Lcy9g2042 | 332 | MobiDBLite | consensus disorder prediction | 148 | 260 | - | - | |
Lcy9g2042 | 332 | MobiDBLite | consensus disorder prediction | 148 | 163 | - | - | |
Lcy9g2042 | 332 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 121 | 308 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g2042 | 332 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 248 | 297 | IPR011598 | GO:0046983(InterPro) | |
Lcy9g2042 | 332 | Gene3D | - | 250 | 306 | IPR036638 | GO:0046983(InterPro) | |
Lcy9g2042 | 332 | CDD | bHLH_AtIND_like | 249 | 311 | - | - | |
Lcy9g2042 | 332 | SMART | finulus | 254 | 303 | IPR011598 | GO:0046983(InterPro) | |
Lcy9g2042 | 332 | Pfam | Helix-loop-helix DNA-binding domain | 258 | 298 | IPR011598 | GO:0046983(InterPro) | |
Lcy9g2042 | 332 | MobiDBLite | consensus disorder prediction | 202 | 230 | - | - | |
Lcy9g2042 | 332 | FunFam | Basic helix-loop-helix transcription factor | 249 | 306 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1145 | Lcy-Chr10:33871325 | Lcy9g2042 | Lcy-Chr9:45292387 | 8.76E-21 | dispersed | |
Lcy4g0587 | Lcy-Chr4:7077039 | Lcy9g2042 | Lcy-Chr9:45292387 | 3.75E-09 | dispersed | |
Lcy8g0681 | Lcy-Chr8:24954688 | Lcy9g2042 | Lcy-Chr9:45292387 | 1.16E-15 | dispersed | |
Lcy9g1468 | Lcy-Chr9:39739713 | Lcy9g2042 | Lcy-Chr9:45292387 | 5.77E-08 | dispersed | |
Lcy9g2004 | Lcy-Chr9:44925824 | Lcy9g2042 | Lcy-Chr9:45292387 | 4.71E-09 | dispersed | |
Lcy9g2042 | Lcy-Chr9:45292387 | Lcy9g0203 | Lcy-Chr9:4782003 | 7.52E-47 | dispersed | |
Lcy13g2155 | Lcy-Chr13:40466769 | Lcy9g2042 | Lcy-Chr9:45292387 | 8.82E-08 | wgd | |
Lcy13g2130 | Lcy-Chr13:40209447 | Lcy9g2042 | Lcy-Chr9:45292387 | 1.15E-46 | wgd | |
Lcy4g0174 | Lcy-Chr4:2239805 | Lcy9g2042 | Lcy-Chr9:45292387 | 9.94E-27 | wgd | |
Lcy6g0477 | Lcy-Chr6:4499006 | Lcy9g2042 | Lcy-Chr9:45292387 | 8.75E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20713 | None | None | None | None | Lcy | TF |
Pathway information
