Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2044 ATGAGTTGCAACGGTTGCAGAGTTCTCCGTAAGGGCTGCAGCGAAGGTTGCGTTTTAAGGTCAAGTCTCCACTGGATTGACTCACCCGAAGCCCAAGGCAACGCCACCTTATTTCTCGCCAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTCCCCCATCATCAAAGACCCGCTCTGTTTCAGTCTCTGTTATTTGAAGCTTGCGGCCGCACGGTCAACCCGGTCAGCGGCGCCGTGGGGTTGTTATCGAGCGGGAACTGGCACGTCTGTCAGGCGGCGGCCGAGACCGTTCTCAGCGGAGGAGTTCTCCGGCCGATACCCGGAATCGAGCTTTCTGGAAATCCCACGCCCAACGTCGATGAATCCTCCATCACTTTCAATACGGATGTTTGGACCACCACCACACGGAATCTCCAATTTTACCCATCCATTCCGTCCGACTTCCGGCGGCTCTCCGATCTCGGCCTCGCCACTGGCAGAGGAAAGAATCATCCGTTGGAGAATCGGCGCTCTCTCGATTCAGAGGAGTCGGTGATGACCAGCTTTGGAAGCGGCGATCACGGCGACGGCTACCGGCGGAAAGAGACGAAGCTTTTGAACTTATTCATCTGA 624 55.93 MSCNGCRVLRKGCSEGCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLSGGVLRPIPGIELSGNPTPNVDESSITFNTDVWTTTTRNLQFYPSIPSDFRRLSDLGLATGRGKNHPLENRRSLDSEESVMTSFGSGDHGDGYRRKETKLLNLFI 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45312270 45313610 + Maker00016269 Lcy9g2044 643160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2044 207 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lcy9g2044 207 MobiDBLite consensus disorder prediction 163 193 - -
Lcy9g2044 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 128 - GO:0010468(PANTHER)
Lcy9g2044 207 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0439 Lcy-Chr2:3668471 Lcy9g2044 Lcy-Chr9:45312270 2.65E-39 dispersed
Lcy7g0468 Lcy-Chr7:4153870 Lcy9g2044 Lcy-Chr9:45312270 6.34E-46 dispersed
Lcy9g0561 Lcy-Chr9:18046838 Lcy9g2044 Lcy-Chr9:45312270 4.04E-25 transposed
Lcy1g0925 Lcy-Chr1:8066962 Lcy9g2044 Lcy-Chr9:45312270 4.04E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20715 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2044 - - - 0.0