Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g2056 | ATGACAAAATTCCGGCAAGATCCCGCCGTCTCCGTCGCATCGCGACAATTGTTGGGACGAAGAGTGAGTGATAGTAGTGAAGCCATGGGAGTTTTAGGAGCTATATTTTTATACATTCCACTGTTTTTAGTGTTGTACACATTAACAGAGCAGTTTCTTCACAAAATTCGAAACCTCCCGCCGACCCCTTTCCCGTCGGTTCCAGTCATCGGCCATCTCCACCTTCTGAAGAAGCCCCTCTACCGGACTTTGGCGAAGATCTCGAACCGGTACGGCCCGGTTGTCTTTCTCCGGTTCGGATCACGCCAAGTTCTCGTGGTGTCGTCTCCTTCCGCGGCCGAAGAATGTCTGACCAAGAACGACATCGTGTTTGCGAACCGGCCTCGCCTCCTCCTATCCAAGTGGTTCGGATACAACAACACGAACCTCGTCTGGTCATCGTATGGGGACCACTGGCGCAACCTCCGCCGAATCTCCACCGTTGAAGTCTTGTCCACTCATCGCCTTCAGATGCTCTCGACCGTCCGTCTGGAAGAGGTCAACTCTTTGATTCGGAGGCTCGCTAGAAGCGAAACCCAGGTGCATAACATGAAGAATGCGTTTTTCGATCTGACTTATAACATCATGTTGAGGATGATTGTCGGAAAGCGGTTTTACGGTGATGACGTGGACGATGCTGACGAGGCAAGATGTTATAGAGAGTTACAGGCTGAGTCAACTCGATTGAGTGGTAAGTCAAATATAGGAGATTTTATCCCGTTGATGTCGTGGCTGGGATTTGGATCGGCTGTGGAGAATGAGATAATGGAATGTCACAAAAGAAGAGACGCTTTCATGCAGAGTTTGATTGACCAGCAAAGGAAAAGAATGGTTCAAACTGAAACTGGAGATTCCTTTCGCGATGGAAGGAAGAAAACGATGATTGAAGTACTGTTAGAGCTACAAGAATCTCAACCTGAGCAGTACAATGACGAAACTATCAAAGCCTTGATGCTGGTTCTGTTGGCTGCAGGTACGGAAACATCAGTGAACACGATGGAATGGGCCCTATCTCTTATGTTGAACCAACCAGAAGTTTTAAAGAAAGCGCAGATCGAAATTGACTGTCAAGTTGGCCAAGACCGTCTGATTGACGAATCTGACGTGGCGAACCTTCCCTACCTACGTGGCATCATCAACGAAACCTTACGAATGTACCCTCCAGGTCCACTGATGGTACCCCACGAGTCATCAAAAGACTGTAGCGTTGGAGGATACCATATCCCACGTGGCACTATGCTGTACGTGAATTTATGGGCGATTCATAACGACCCCAAGAATTGGGGTGAGCCGAGAAAGTTTGATCCCGAGAGGTTTGAGAGGGTGGAAAGTGAGAAGTATGGGTTCAATCTGATGCCGTTCGGGGCGGGTAGAAGGGGCTGTCCAGGAGAGGGATTGGGGCTTCGCATGATTGGGCTTGTAATGGGCTCACTGATCCAGTGCTTTGAATGGGAGCGTCCTGGCGAGGAGTTGGTGGATATGACAGAAGGCATTGCAGTCTCTATGCCCAAGGCCCAACGCTTGCTCGCTAAATGTACGCCTCGACCCATTGCCGAACATCTTGATCTTTCTCCAACCAGATCCAACCCGGCCCATTATAAAAATTGA | 1647 | 49.24 | MTKFRQDPAVSVASRQLLGRRVSDSSEAMGVLGAIFLYIPLFLVLYTLTEQFLHKIRNLPPTPFPSVPVIGHLHLLKKPLYRTLAKISNRYGPVVFLRFGSRQVLVVSSPSAAEECLTKNDIVFANRPRLLLSKWFGYNNTNLVWSSYGDHWRNLRRISTVEVLSTHRLQMLSTVRLEEVNSLIRRLARSETQVHNMKNAFFDLTYNIMLRMIVGKRFYGDDVDDADEARCYRELQAESTRLSGKSNIGDFIPLMSWLGFGSAVENEIMECHKRRDAFMQSLIDQQRKRMVQTETGDSFRDGRKKTMIEVLLELQESQPEQYNDETIKALMLVLLAAGTETSVNTMEWALSLMLNQPEVLKKAQIEIDCQVGQDRLIDESDVANLPYLRGIINETLRMYPPGPLMVPHESSKDCSVGGYHIPRGTMLYVNLWAIHNDPKNWGEPRKFDPERFERVESEKYGFNLMPFGAGRRGCPGEGLGLRMIGLVMGSLIQCFEWERPGEELVDMTEGIAVSMPKAQRLLAKCTPRPIAEHLDLSPTRSNPAHYKN | 548 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 45366291 | 45370354 | - | Maker00016936 | Lcy9g2056 | 643172 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g2056 | 548 | PRINTS | P450 superfamily signature | 390 | 401 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | P450 superfamily signature | 337 | 354 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | P450 superfamily signature | 465 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | P450 superfamily signature | 474 | 485 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 467 | 476 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy9g2056 | 548 | PANTHER | CYTOCHROME P450 82C3-RELATED | 41 | 528 | IPR050651 | - | |
| Lcy9g2056 | 548 | FunFam | Cytochrome P450 family protein | 52 | 531 | - | - | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 326 | 343 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 430 | 454 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 389 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 204 | 222 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 474 | 497 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 464 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 112 | 133 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | PRINTS | E-class P450 group I signature | 346 | 372 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | CDD | CYP81 | 92 | 521 | - | - | |
| Lcy9g2056 | 548 | Gene3D | Cytochrome P450 | 54 | 534 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | Coils | Coil | 180 | 200 | - | - | |
| Lcy9g2056 | 548 | Pfam | Cytochrome P450 | 61 | 517 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2056 | 548 | SUPERFAMILY | Cytochrome P450 | 60 | 528 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g2056 | Lcy-Chr9:45366291 | Lcy13g1039 | Lcy-Chr13:22711472 | 4.52E-147 | dispersed | |
| Lcy9g2056 | Lcy-Chr9:45366291 | Lcy9g2057 | Lcy-Chr9:45371539 | 1.62E-221 | tandem | |
| Lcy9g1967 | Lcy-Chr9:44621530 | Lcy9g2056 | Lcy-Chr9:45366291 | 9.26E-30 | transposed | |
| Lcy13g2119 | Lcy-Chr13:40112853 | Lcy9g2056 | Lcy-Chr9:45366291 | 4.76E-183 | wgd |
Pathway information