Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2059 | ATGGAAGAGCGCGCAACCTTAATTTGCCTTTTCCAGCCCTTTTCAGATCCGAGGTCGACTCAAAGTATGGCGGATAAGGAGAATATATTTCGAGTCACTCGGGGTTCTAAGAGGAGGGCGGCGGAGGCCGCTACCCCCGACGACCGCTCCGCTAACAAGAGGAGAGTTGTACTCGGAGAGCTTCCTATTTTACAGAATGCAACTTCTTCCGTCGATCGGAAGTCCAAGCCCAGAGCCACCAGGCAGAGACGGAGAGTAAAATCGAGGGATACAGCGGGGACCAGTGCTGCTGCTGAAACCAATACACTTCCGGAAGCCGACGTCAACTTATCGAATGAGGGGAATTCGGACGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAGTATCTTCGCGCAATGGAGACTGATCCGAGAAGAAGGCCCTTGCCAGATTACATCGGGAGGGTACAAAGGGATATAAGTGCCAATATGAGGGGAATTCTAGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTTGTTTCAGACACTCTCTACCTCTCTATTTCATATGTTGACAGATACTTATCTCTAAATGCAATCAGCAGGCAAAAACTTCAATTGCTAGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACAAGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAGTCCAACAATAAAGACATTTTTAAGGCAATTTAATACTTTACAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCAAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATACAAGCCAGCTGATATGAAAGATTGCGTTCTACTTATACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACATAAGTTCAAATTTGTGTCTGTCATGCCTTCACCTCCGGAGATCCATATTCCATATTTTGAAGATGTTAGAATATGA | 1158 | 43.52 | MEERATLICLFQPFSDPRSTQSMADKENIFRVTRGSKRRAAEAATPDDRSANKRRVVLGELPILQNATSSVDRKSKPRATRQRRRVKSRDTAGTSAAAETNTLPEADVNLSNEGNSDDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQRDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPQVEEFVYITDNTYNREEVVEMEAEILKSLEFELGSPTIKTFLRQFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADMKDCVLLIHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIHIPYFEDVRI | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 45380665 | 45383483 | + | Maker00017001 | Lcy9g2059 | 643175 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2059 | 385 | SUPERFAMILY | Cyclin-like | 117 | 256 | IPR036915 | - | |
Lcy9g2059 | 385 | PANTHER | CYCLINS | 108 | 360 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Lcy9g2059 | 385 | FunFam | Mitotic cyclin 6 | 144 | 244 | - | - | |
Lcy9g2059 | 385 | Pfam | Cyclin, C-terminal domain | 259 | 371 | IPR004367 | - | |
Lcy9g2059 | 385 | MobiDBLite | consensus disorder prediction | 93 | 118 | - | - | |
Lcy9g2059 | 385 | Pfam | Cyclin, N-terminal domain | 128 | 256 | IPR006671 | - | |
Lcy9g2059 | 385 | CDD | CYCLIN_AtCycA-like_rpt2 | 259 | 363 | - | - | |
Lcy9g2059 | 385 | Gene3D | - | 142 | 257 | - | - | |
Lcy9g2059 | 385 | SUPERFAMILY | Cyclin-like | 259 | 374 | IPR036915 | - | |
Lcy9g2059 | 385 | MobiDBLite | consensus disorder prediction | 31 | 53 | - | - | |
Lcy9g2059 | 385 | Gene3D | - | 128 | 368 | - | - | |
Lcy9g2059 | 385 | ProSitePatterns | Cyclins signature. | 161 | 192 | IPR048258 | - | |
Lcy9g2059 | 385 | PIRSF | Cyclin_A_B_D_E | 14 | 378 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Lcy9g2059 | 385 | SMART | Cyclin_C_2 | 259 | 372 | IPR004367 | - | |
Lcy9g2059 | 385 | FunFam | Cyclin A1 | 246 | 368 | - | - | |
Lcy9g2059 | 385 | MobiDBLite | consensus disorder prediction | 67 | 119 | - | - | |
Lcy9g2059 | 385 | SMART | cyclin_7 | 166 | 250 | IPR013763 | - | |
Lcy9g2059 | 385 | SMART | cyclin_7 | 259 | 341 | IPR013763 | - | |
Lcy9g2059 | 385 | CDD | CYCLIN_AtCycA_like_rpt1 | 118 | 255 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g2082 | Lcy-Chr3:47773646 | Lcy9g2059 | Lcy-Chr9:45380665 | 1.71E-89 | dispersed | |
Lcy9g1815 | Lcy-Chr9:43278052 | Lcy9g2059 | Lcy-Chr9:45380665 | 1.87E-88 | dispersed | |
Lcy9g2059 | Lcy-Chr9:45380665 | Lcy9g2319 | Lcy-Chr9:47549657 | 5.18E-49 | dispersed | |
Lcy13g2114 | Lcy-Chr13:40077248 | Lcy9g2059 | Lcy-Chr9:45380665 | 1.72E-160 | wgd | |
Lcy4g0192 | Lcy-Chr4:2429697 | Lcy9g2059 | Lcy-Chr9:45380665 | 3.30E-102 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g2059 | K06627 | - | csv:101207493 | 646.736 |