Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2059 ATGGAAGAGCGCGCAACCTTAATTTGCCTTTTCCAGCCCTTTTCAGATCCGAGGTCGACTCAAAGTATGGCGGATAAGGAGAATATATTTCGAGTCACTCGGGGTTCTAAGAGGAGGGCGGCGGAGGCCGCTACCCCCGACGACCGCTCCGCTAACAAGAGGAGAGTTGTACTCGGAGAGCTTCCTATTTTACAGAATGCAACTTCTTCCGTCGATCGGAAGTCCAAGCCCAGAGCCACCAGGCAGAGACGGAGAGTAAAATCGAGGGATACAGCGGGGACCAGTGCTGCTGCTGAAACCAATACACTTCCGGAAGCCGACGTCAACTTATCGAATGAGGGGAATTCGGACGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAGTATCTTCGCGCAATGGAGACTGATCCGAGAAGAAGGCCCTTGCCAGATTACATCGGGAGGGTACAAAGGGATATAAGTGCCAATATGAGGGGAATTCTAGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTTGTTTCAGACACTCTCTACCTCTCTATTTCATATGTTGACAGATACTTATCTCTAAATGCAATCAGCAGGCAAAAACTTCAATTGCTAGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACAAGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAGTCCAACAATAAAGACATTTTTAAGGCAATTTAATACTTTACAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCAAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATACAAGCCAGCTGATATGAAAGATTGCGTTCTACTTATACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACATAAGTTCAAATTTGTGTCTGTCATGCCTTCACCTCCGGAGATCCATATTCCATATTTTGAAGATGTTAGAATATGA 1158 43.52 MEERATLICLFQPFSDPRSTQSMADKENIFRVTRGSKRRAAEAATPDDRSANKRRVVLGELPILQNATSSVDRKSKPRATRQRRRVKSRDTAGTSAAAETNTLPEADVNLSNEGNSDDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQRDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPQVEEFVYITDNTYNREEVVEMEAEILKSLEFELGSPTIKTFLRQFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADMKDCVLLIHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIHIPYFEDVRI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45380665 45383483 + Maker00017001 Lcy9g2059 643175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2059 385 SUPERFAMILY Cyclin-like 117 256 IPR036915 -
Lcy9g2059 385 PANTHER CYCLINS 108 360 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy9g2059 385 FunFam Mitotic cyclin 6 144 244 - -
Lcy9g2059 385 Pfam Cyclin, C-terminal domain 259 371 IPR004367 -
Lcy9g2059 385 MobiDBLite consensus disorder prediction 93 118 - -
Lcy9g2059 385 Pfam Cyclin, N-terminal domain 128 256 IPR006671 -
Lcy9g2059 385 CDD CYCLIN_AtCycA-like_rpt2 259 363 - -
Lcy9g2059 385 Gene3D - 142 257 - -
Lcy9g2059 385 SUPERFAMILY Cyclin-like 259 374 IPR036915 -
Lcy9g2059 385 MobiDBLite consensus disorder prediction 31 53 - -
Lcy9g2059 385 Gene3D - 128 368 - -
Lcy9g2059 385 ProSitePatterns Cyclins signature. 161 192 IPR048258 -
Lcy9g2059 385 PIRSF Cyclin_A_B_D_E 14 378 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lcy9g2059 385 SMART Cyclin_C_2 259 372 IPR004367 -
Lcy9g2059 385 FunFam Cyclin A1 246 368 - -
Lcy9g2059 385 MobiDBLite consensus disorder prediction 67 119 - -
Lcy9g2059 385 SMART cyclin_7 166 250 IPR013763 -
Lcy9g2059 385 SMART cyclin_7 259 341 IPR013763 -
Lcy9g2059 385 CDD CYCLIN_AtCycA_like_rpt1 118 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2082 Lcy-Chr3:47773646 Lcy9g2059 Lcy-Chr9:45380665 1.71E-89 dispersed
Lcy9g1815 Lcy-Chr9:43278052 Lcy9g2059 Lcy-Chr9:45380665 1.87E-88 dispersed
Lcy9g2059 Lcy-Chr9:45380665 Lcy9g2319 Lcy-Chr9:47549657 5.18E-49 dispersed
Lcy13g2114 Lcy-Chr13:40077248 Lcy9g2059 Lcy-Chr9:45380665 1.72E-160 wgd
Lcy4g0192 Lcy-Chr4:2429697 Lcy9g2059 Lcy-Chr9:45380665 3.30E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2059 K06627 - csv:101207493 646.736