Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2076 | ATGCTCCTTCTTCACAATAATATGGCTGTCGAGCTTATGGTGGGTTTTGGGGATGCTGCTACTAATTTCACGCCCAAGATGGAGGAAAATGCCGCTGTCTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCGAGAATTTCCTCCGATTGATGTCTCATACTCCTAATCAACATCACTCCGAAGACCATTCTTCCACTTCCACTGCTCCCAATGCTACTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAGAAGGTCATTTCTTTGCTCGACCGGAACAGAACCGGCCATGCCCGCTTCAGAAGGGCTCCCGTTGTTACTACTACTTCCCCTCCGCCGCCGCCGCCTCCGCCCAAGGTCAAGACGCAGCACCAAGATCCGAGTTCGTCGTCTCCGATTTCGACCCCGCAGATTCAAGTAAAGAAACAGGAATCTGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCTTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAATCCCCATCAGCCTTCTTCTAATCCGCCAAATACCTTCCAAGCCCAGCAAAATTCTTCGTCGGTGGTGCTAAAAAATGGGTCTGCAGATAGAAAAGATTCGACTACCACCATCAATTTCGCAGCCTCGCCCCCTATTTCCGCTGCAAATTCGTATATTTCATCGTTAACCGGAGACACTGAAAGCTTACAGCCATCTCTGTCGTCTGGATTTCAGTTCACCCACATGTCCCAGGTCTCATCCGCCGGAAAGCCCCCTCTTTCATCCTCCTCGCTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCATGAAGTGTGGCTCGTCGTCCGGCCGGTGTCACTGCTCCAAGAAGAGGAAAAACAGGATAAAGAGAGTCATCAGAGTTCCCGCCGTCAGTTCGAAACTTGCCGATATACCACCGGACGATTACTCATGGAGAAAGTACGGCCAGAAACCCATCAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTCTGAGAGGGTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA | 1167 | 50.47 | MLLLHNNMAVELMVGFGDAATNFTPKMEENAAVSAVQEAASAGIQSVENFLRLMSHTPNQHHSEDHSSTSTAPNATAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVVTTTSPPPPPPPPKVKTQHQDPSSSSPISTPQIQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSSNPPNTFQAQQNSSSVVLKNGSADRKDSTTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMDDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 45518531 | 45521504 | + | Maker00017011 | Lcy9g2076 | 643192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2076 | 388 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 33 | 377 | IPR044810 | GO:0003700(InterPro) | |
Lcy9g2076 | 388 | MobiDBLite | consensus disorder prediction | 114 | 129 | - | - | |
Lcy9g2076 | 388 | Pfam | Plant zinc cluster domain | 268 | 313 | IPR018872 | - | |
Lcy9g2076 | 388 | ProSiteProfiles | WRKY domain profile. | 310 | 376 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy9g2076 | 388 | Gene3D | WRKY domain | 301 | 376 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy9g2076 | 388 | FunFam | WRKY transcription factor 65 | 299 | 376 | - | - | |
Lcy9g2076 | 388 | MobiDBLite | consensus disorder prediction | 105 | 148 | - | - | |
Lcy9g2076 | 388 | SMART | WRKY_cls | 315 | 375 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy9g2076 | 388 | SUPERFAMILY | WRKY DNA-binding domain | 313 | 374 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy9g2076 | 388 | Pfam | WRKY DNA -binding domain | 317 | 373 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy9g2076 | 388 | MobiDBLite | consensus disorder prediction | 167 | 213 | - | - | |
Lcy9g2076 | 388 | MobiDBLite | consensus disorder prediction | 130 | 148 | - | - | |
Lcy9g2076 | 388 | MobiDBLite | consensus disorder prediction | 181 | 213 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g2149 | Lcy-Chr12:42787404 | Lcy9g2076 | Lcy-Chr9:45518531 | 6.35E-24 | dispersed | |
Lcy3g1547 | Lcy-Chr3:42496291 | Lcy9g2076 | Lcy-Chr9:45518531 | 1.99E-55 | dispersed | |
Lcy6g0850 | Lcy-Chr6:8578878 | Lcy9g2076 | Lcy-Chr9:45518531 | 2.50E-25 | dispersed | |
Lcy8g0896 | Lcy-Chr8:32266610 | Lcy9g2076 | Lcy-Chr9:45518531 | 1.58E-83 | dispersed | |
Lcy9g1888 | Lcy-Chr9:43949389 | Lcy9g2076 | Lcy-Chr9:45518531 | 3.99E-19 | dispersed | |
Lcy9g2076 | Lcy-Chr9:45518531 | Lcy6g0849 | Lcy-Chr6:8565978 | 2.14E-14 | dispersed | |
Lcy7g2006 | Lcy-Chr7:47081037 | Lcy9g2076 | Lcy-Chr9:45518531 | 2.95E-90 | transposed | |
Lcy9g1768 | Lcy-Chr9:42891173 | Lcy9g2076 | Lcy-Chr9:45518531 | 3.59E-69 | transposed | |
Lcy1g0971 | Lcy-Chr1:8514721 | Lcy9g2076 | Lcy-Chr9:45518531 | 1.13E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20718 | None | None | None | None | Lcy | TF |
Pathway information
