Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2076 ATGCTCCTTCTTCACAATAATATGGCTGTCGAGCTTATGGTGGGTTTTGGGGATGCTGCTACTAATTTCACGCCCAAGATGGAGGAAAATGCCGCTGTCTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCGAGAATTTCCTCCGATTGATGTCTCATACTCCTAATCAACATCACTCCGAAGACCATTCTTCCACTTCCACTGCTCCCAATGCTACTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAGAAGGTCATTTCTTTGCTCGACCGGAACAGAACCGGCCATGCCCGCTTCAGAAGGGCTCCCGTTGTTACTACTACTTCCCCTCCGCCGCCGCCGCCTCCGCCCAAGGTCAAGACGCAGCACCAAGATCCGAGTTCGTCGTCTCCGATTTCGACCCCGCAGATTCAAGTAAAGAAACAGGAATCTGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCTTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAATCCCCATCAGCCTTCTTCTAATCCGCCAAATACCTTCCAAGCCCAGCAAAATTCTTCGTCGGTGGTGCTAAAAAATGGGTCTGCAGATAGAAAAGATTCGACTACCACCATCAATTTCGCAGCCTCGCCCCCTATTTCCGCTGCAAATTCGTATATTTCATCGTTAACCGGAGACACTGAAAGCTTACAGCCATCTCTGTCGTCTGGATTTCAGTTCACCCACATGTCCCAGGTCTCATCCGCCGGAAAGCCCCCTCTTTCATCCTCCTCGCTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCATGAAGTGTGGCTCGTCGTCCGGCCGGTGTCACTGCTCCAAGAAGAGGAAAAACAGGATAAAGAGAGTCATCAGAGTTCCCGCCGTCAGTTCGAAACTTGCCGATATACCACCGGACGATTACTCATGGAGAAAGTACGGCCAGAAACCCATCAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTCTGAGAGGGTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA 1167 50.47 MLLLHNNMAVELMVGFGDAATNFTPKMEENAAVSAVQEAASAGIQSVENFLRLMSHTPNQHHSEDHSSTSTAPNATAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVVTTTSPPPPPPPPKVKTQHQDPSSSSPISTPQIQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSSNPPNTFQAQQNSSSVVLKNGSADRKDSTTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMDDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45518531 45521504 + Maker00017011 Lcy9g2076 643192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2076 388 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 33 377 IPR044810 GO:0003700(InterPro)
Lcy9g2076 388 MobiDBLite consensus disorder prediction 114 129 - -
Lcy9g2076 388 Pfam Plant zinc cluster domain 268 313 IPR018872 -
Lcy9g2076 388 ProSiteProfiles WRKY domain profile. 310 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g2076 388 Gene3D WRKY domain 301 376 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g2076 388 FunFam WRKY transcription factor 65 299 376 - -
Lcy9g2076 388 MobiDBLite consensus disorder prediction 105 148 - -
Lcy9g2076 388 SMART WRKY_cls 315 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g2076 388 SUPERFAMILY WRKY DNA-binding domain 313 374 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g2076 388 Pfam WRKY DNA -binding domain 317 373 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy9g2076 388 MobiDBLite consensus disorder prediction 167 213 - -
Lcy9g2076 388 MobiDBLite consensus disorder prediction 130 148 - -
Lcy9g2076 388 MobiDBLite consensus disorder prediction 181 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2149 Lcy-Chr12:42787404 Lcy9g2076 Lcy-Chr9:45518531 6.35E-24 dispersed
Lcy3g1547 Lcy-Chr3:42496291 Lcy9g2076 Lcy-Chr9:45518531 1.99E-55 dispersed
Lcy6g0850 Lcy-Chr6:8578878 Lcy9g2076 Lcy-Chr9:45518531 2.50E-25 dispersed
Lcy8g0896 Lcy-Chr8:32266610 Lcy9g2076 Lcy-Chr9:45518531 1.58E-83 dispersed
Lcy9g1888 Lcy-Chr9:43949389 Lcy9g2076 Lcy-Chr9:45518531 3.99E-19 dispersed
Lcy9g2076 Lcy-Chr9:45518531 Lcy6g0849 Lcy-Chr6:8565978 2.14E-14 dispersed
Lcy7g2006 Lcy-Chr7:47081037 Lcy9g2076 Lcy-Chr9:45518531 2.95E-90 transposed
Lcy9g1768 Lcy-Chr9:42891173 Lcy9g2076 Lcy-Chr9:45518531 3.59E-69 transposed
Lcy1g0971 Lcy-Chr1:8514721 Lcy9g2076 Lcy-Chr9:45518531 1.13E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20718 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2076 - - - 0.0