Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2082 ATGGACGTTCTGCCATTATTACCCTCTTCTCAATTGCTGATTTCGAATAATTCTATCAATTTCAGGCACAGGGTCTCCATTGCTGTAAAACCCAATTTTCAGAGTTCGTGTAGATGGCGAATTCGAGCCACCGCCGAAAATGGACCTTCATCGGCGTCGACCTCCGAGATCGACATGGTGAGGAACAGAGAGGGGATTTTTACCGCCAAACAAAGCAAGGTCGTCGTGCTTTGGGATCTCGATAATAAACCCCCTCGTGGGCCGCCGTACGAGGCGGCTATGGCGCTGAAACGAGTGGCGCAACGATTTGGGCAAGTGGTCGACATGTCGGCATACGCCAATCGCCACGCCTTTATCCATTTGCCGCAATGGGTTGTCGAGGAACGCCGCGAGCGTCGGCAATTGGACATTTTTGAACGCAAAGGGTTAATCACGCCGTCCGAATCGTACGTCTGTGGGGTTTGCGGTCGCAAGTGCAAAACAAATCTAGACCTCAAGAAGCATTTCAAGCAACTTCACGAACGCGAGCGCCAGAAGAAATTGAACAGAATGAGGTGTCTCAAGGGCAAAAAGCGGCAGCGGTATAAGGAAAGGTTCATATCTGGGAACCATAAGTACAATGAAGCAGCGAGGTCTCTGATTACTCCGAAAGTTGGGTATGGGTTGGCCTCGGAATTGAGACGTGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCACAGGCGGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGTTTCTGGTTTCGGATGATTCTGATTTCTCAGAGATGTTAAGGAAGGCTAAGGAGGCTAATTTGGGGACTGTGGTGGTTGGTGATCGTGATAGGGCATTGGGTAGGCACGCGGATTTGTGGGTTCCGTGGATGGGAGTTGAAAATGGGGATGTTACAGAGGAGGATTTGGTGCCCAAAAGATGGAGGATGCGGAGAAGCGAGGAGGACTTGGATGAAGATGATGGTTTTTCTGTTTCTCGTTTTTATGGAGACATTGAAGGTGGCAGTGATTTGGAGAGTGTTGTGCAAGAGCTTGCTTCCCCAAGTACAGGGTTCAATGGCTTTAGAATTTCTGCATTTTCAGAGGGGGAAGATGAAGAAGAAGAAGATGATGATGATGAATGGGTTGAGGAAGAAGAAGATGTGGCATCTGACTATCTGCTAGTGATGAGTGACGAGGAAGATGCGTATTTCTGA 1242 48.87 MDVLPLLPSSQLLISNNSINFRHRVSIAVKPNFQSSCRWRIRATAENGPSSASTSEIDMVRNREGIFTAKQSKVVVLWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLDIFERKGLITPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRCLKGKKRQRYKERFISGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMFLVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDVTEEDLVPKRWRMRRSEEDLDEDDGFSVSRFYGDIEGGSDLESVVQELASPSTGFNGFRISAFSEGEDEEEEDDDDEWVEEEEDVASDYLLVMSDEEDAYF 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45561492 45562733 + Maker00016617 Lcy9g2082 643198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2082 413 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 39 387 - -
Lcy9g2082 413 ProSitePatterns Zinc finger C2H2 type domain signature. 152 173 IPR013087 -
Lcy9g2082 413 Gene3D - 67 306 - -
Lcy9g2082 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 178 IPR013087 -
Lcy9g2082 413 CDD PIN_LabA-like 160 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2054 Lcy-Chr6:43621634 Lcy9g2082 Lcy-Chr9:45561492 1.80E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20719 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2082 - - - 0.0