Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2084 ATGGAAGGAGAAGTTTGCTCCGCTGTAAGTTCATCGCCAACCGGGTCAGAGAAGAGGAAACAAAGGCATCAGAATAATCATCTTCAGCAAGAAAAGCCTTACAGAGGAATACGGATGAGGAAGTGGGGGAAGTGGGTTGCTGAAATCAGAGAACCCAACAAGCGCTCCAGGATTTGGCTTGGTTCTTACACGACTCCCGTGGCCGCCGCGAGGGCTTACGACACCGCGGTTTTCTACCTCCGAGGCCCCACCGCCCGCCTAAACTTCCCGGATTTGGTGTTCGAAGAGGACCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAAAGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAGACCTCTCTCCATGCCTCTAACTCCAACTCTCAAATTTCCGAGAAGCCTGATTTGAACGAGTACCCCAACCCCGAAAGCTCAGACGACGATTAA 459 53.81 MEGEVCSAVSSSPTGSEKRKQRHQNNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPDLVFEEDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSQISEKPDLNEYPNPESSDDD 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45577194 45577652 + Maker00016674 Lcy9g2084 643200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2084 152 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2084 152 MobiDBLite consensus disorder prediction 1 31 - -
Lcy9g2084 152 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2084 152 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
Lcy9g2084 152 MobiDBLite consensus disorder prediction 16 31 - -
Lcy9g2084 152 CDD AP2 34 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2084 152 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2084 152 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2084 152 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2084 152 MobiDBLite consensus disorder prediction 123 152 - -
Lcy9g2084 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 151 - -
Lcy9g2084 152 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g2084 152 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Lcy9g2084 152 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0773 Lcy-Chr8:28362107 Lcy9g2084 Lcy-Chr9:45577194 1.22E-50 dispersed
Lcy9g1927 Lcy-Chr9:44281920 Lcy9g2084 Lcy-Chr9:45577194 4.85E-24 dispersed
Lcy9g1935 Lcy-Chr9:44365003 Lcy9g2084 Lcy-Chr9:45577194 6.44E-24 dispersed
Lcy9g2084 Lcy-Chr9:45577194 Lcy6g1164 Lcy-Chr6:13456833 1.15E-22 dispersed
Lcy1g0975 Lcy-Chr1:8570647 Lcy9g2084 Lcy-Chr9:45577194 4.40E-49 wgd
Lcy13g2098 Lcy-Chr13:39961287 Lcy9g2084 Lcy-Chr9:45577194 3.98E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20720 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2084 K09286 - csv:101219005 274.633